View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_19 (Length: 530)

Name: NF18974_low_19
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_19
NF18974_low_19
[»] chr8 (1 HSPs)
chr8 (10-530)||(43750652-43751168)
[»] chr1 (3 HSPs)
chr1 (10-530)||(49164186-49164705)
chr1 (19-112)||(12880823-12880916)
chr1 (180-268)||(12874043-12874131)


Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 43750652 - 43751168
Alignment:
Q  10 attattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttggaaattgaata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43750652 attattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttggaaattgaata 43750751  T
Q  110 tcacgttgatggaaataatcaacatgagcagaacaacctcgttgaaaatttggatgaaaaacctacatgcaagaagactagaccaaaatcacaaatttca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43750752 tcacgttgatggaaataatcaacatgagcagaacaacctcgttgaaaatttggatgaaaaacctacatgcaagaagactagaccaaaatcacaaatttca 43750851  T
Q  210 agtcttcaaccacataagaaatcgagaattggcgcaagcgaagacgttggaacaagctccaaattgnnnnnnnntcctaaacttgtccaagttaaaggta 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  43750852 agtcttcaaccacataagaaatcgagaattggcgcaagcaaagacgttggaacaagctccaaattgaaaaaaaatcctaaacttgtccaagttaaaggta 43750951  T
Q  310 taaaaaattcttgattggattaatctctatcatttcatttatctaactaagattttgatttttgagattcannnnnnnataacatgccattttcaatttc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  43750952 taaaaaattcttgattggattaatctctatcatttcatttatctaactaagattttgatttttgagattca-ttttttataacatgccattttcaatttc 43751050  T
Q  410 ttagaggagagtgaagataccactgaatgccttaatgtgaagcatgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43751051 ttagaggagagtgaagataccactgaatgccttaatgtga---atgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaa 43751147  T
Q  510 aaaattacaaaactaacaatc 530  Q
    |||||||||||||||||||||    
T  43751148 aaaattacaaaactaacaatc 43751168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 49164186 - 49164705
Alignment:
Q  10 attattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttggaaattgaata 109  Q
    |||||||  |||||||||| |||||| || ||||||||||| | ||||| ||||||||| || ||||||| ||| ||||||||||||| ||||| |||||    
T  49164186 attattcattagatcatggtcacatggtgctgtttcaatatcagaaaacctctcattttgaggtttacatttttgacaagagtacttttgaaatcgaata 49164285  T
Q  110 tcacgttgatggaaataatcaacatgagcagaacaacctcgttgaaaatttggatgaaaaacctacatgcaagaagactagaccaaaatcacaaatttca 209  Q
    ||  |||||||| |||||||||||||| |||| ||| |   |||||| |||||||||  ||||| | | |||||||| ||||||||||||||||||||||    
T  49164286 tcgtgttgatggtaataatcaacatgaacagagcaatccaattgaaattttggatgagcaaccttcttacaagaagagtagaccaaaatcacaaatttca 49164385  T
Q  210 agtcttcaaccacataagaaatcgagaattggcgcaagcgaagacgttggaacaagctccaaattgnnnnnnnntcctaaacttgtccaagttaaaggta 309  Q
    |||  |||||||| |||||||| |||||||| |||||| ||||| ||||||||||||||||||| |        ||||||||||||||||||||||||||    
T  49164386 agttctcaaccacttaagaaattgagaattgacgcaagtgaagatgttggaacaagctccaaatcgcaaaacattcctaaacttgtccaagttaaaggta 49164485  T
Q  310 taaaaaattcttgattggattaatctctatcatttcatttatctaactaagattttgatttttgagattcannnnnnnataacatgccattttcaatttc 409  Q
    ||| |||||| || |||||||||||||||||||||||||||| |||  |||||||||||||||||  || |       || |||| |||| |||||||||    
T  49164486 taataaattcatggttggattaatctctatcatttcatttatttaatcaagattttgatttttgatgttga-tttttcattacataccatattcaatttc 49164584  T
Q  410 ttagaggagagtgaagataccactgaatgccttaatgtgaagcatgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaa 509  Q
    | ||| |||| |||   ||||||| ||||||| ||||||||||||| |||||||| || |||||||||| | ||||||| ||||||||||||||||||||    
T  49164585 tcagaagagattgattctaccactaaatgcctgaatgtgaagcatggtcaagagcagaggaattcaactgctaaaattgttgaagctttaaacaaagcaa 49164684  T
Q  510 aaaattacaaaactaacaatc 530  Q
    |||| ||  || |||||||||    
T  49164685 aaaactatgaatctaacaatc 49164705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 12880823 - 12880916
Alignment:
Q  19 tagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttggaaattgaatatca 112  Q
    |||| ||||||||||||  | ||||||||||| |||||| ||| |||||| || ||||||||||| || |||||||||| ||||||||||||||    
T  12880823 tagaccatggacacatgacggtgtttcaatataaaaaaatatcacattttgaggtttacatattttaccagagtacttttgaaattgaatatca 12880916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 12874043 - 12874131
Alignment:
Q  180 aagaagactagaccaaaatcacaaatttcaagtcttcaaccacataagaaatcgagaattggcgcaagcgaagacgttggaacaagctc 268  Q
    ||||| |||||||||||||| | ||||    ||| ||||||||||||||||| ||||| || | |||| ||||  ||||||||||||||    
T  12874043 aagaaaactagaccaaaatcgccaattatgtgtcctcaaccacataagaaattgagaagtgactcaagtgaaggtgttggaacaagctc 12874131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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