View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_2 (Length: 934)

Name: NF18974_low_2
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_2
NF18974_low_2
[»] chr3 (12 HSPs)
chr3 (301-500)||(19405390-19405593)
chr3 (846-921)||(2811463-2811538)
chr3 (846-921)||(41071248-41071323)
chr3 (858-921)||(7627143-7627206)
chr3 (846-913)||(8694126-8694193)
chr3 (846-913)||(9046013-9046080)
chr3 (128-325)||(19405741-19405935)
chr3 (865-921)||(47829879-47829935)
chr3 (846-921)||(53630117-53630192)
chr3 (865-921)||(34440341-34440397)
chr3 (846-913)||(17075514-17075581)
chr3 (870-913)||(25157836-25157879)
[»] chr6 (10 HSPs)
chr6 (301-472)||(31532685-31532855)
chr6 (392-500)||(31532985-31533094)
chr6 (304-397)||(31533903-31534000)
chr6 (846-921)||(31020798-31020873)
chr6 (846-914)||(19222642-19222710)
chr6 (700-787)||(31020623-31020710)
chr6 (846-921)||(24122478-24122553)
chr6 (846-921)||(35007081-35007156)
chr6 (846-913)||(701404-701471)
chr6 (846-921)||(18790892-18790967)
[»] chr5 (9 HSPs)
chr5 (846-921)||(24211208-24211283)
chr5 (358-467)||(14093824-14093935)
chr5 (213-325)||(7963774-7963886)
chr5 (848-919)||(8431196-8431267)
chr5 (846-911)||(11799062-11799127)
chr5 (846-921)||(2740893-2740968)
chr5 (847-921)||(13272049-13272123)
chr5 (846-913)||(27348281-27348348)
chr5 (578-619)||(15238942-15238983)
[»] chr8 (7 HSPs)
chr8 (851-919)||(16995645-16995713)
chr8 (846-921)||(22721423-22721497)
chr8 (846-913)||(26489035-26489102)
chr8 (846-921)||(10529251-10529326)
chr8 (846-921)||(14094916-14094991)
chr8 (846-921)||(37229990-37230065)
chr8 (190-270)||(13987386-13987467)
[»] chr7 (15 HSPs)
chr7 (846-921)||(16728681-16728756)
chr7 (846-921)||(17705753-17705828)
chr7 (846-921)||(17715738-17715813)
chr7 (846-920)||(6715906-6715980)
chr7 (870-921)||(15826294-15826345)
chr7 (846-921)||(21065956-21066031)
chr7 (846-913)||(12625281-12625348)
chr7 (846-921)||(38455396-38455471)
chr7 (846-914)||(8229953-8230021)
chr7 (846-918)||(39561357-39561429)
chr7 (846-921)||(13553100-13553175)
chr7 (846-921)||(8525163-8525238)
chr7 (886-921)||(25770367-25770402)
chr7 (886-921)||(25775934-25775969)
chr7 (847-913)||(23555560-23555626)
[»] chr4 (8 HSPs)
chr4 (846-913)||(19810756-19810823)
chr4 (846-921)||(38649869-38649944)
chr4 (846-910)||(19819748-19819812)
chr4 (846-921)||(13505444-13505519)
chr4 (877-921)||(6826464-6826508)
chr4 (865-921)||(42562828-42562884)
chr4 (846-921)||(32309990-32310065)
chr4 (846-919)||(850273-850346)
[»] chr2 (8 HSPs)
chr2 (846-921)||(11807811-11807886)
chr2 (858-921)||(18206737-18206800)
chr2 (865-921)||(15424326-15424382)
chr2 (846-914)||(31119155-31119223)
chr2 (860-913)||(27757151-27757204)
chr2 (878-913)||(9193804-9193839)
chr2 (846-904)||(27333017-27333075)
chr2 (865-919)||(28033600-28033654)
[»] chr1 (8 HSPs)
chr1 (846-921)||(43784988-43785063)
chr1 (848-921)||(24965640-24965713)
chr1 (846-921)||(20007449-20007524)
chr1 (846-921)||(50907571-50907646)
chr1 (865-921)||(48955644-48955700)
chr1 (865-921)||(48997024-48997080)
chr1 (846-904)||(51391710-51391768)
chr1 (846-899)||(3377837-3377890)
[»] scaffold0046 (1 HSPs)
scaffold0046 (848-921)||(74961-75034)
[»] scaffold0373 (1 HSPs)
scaffold0373 (877-921)||(13765-13809)
[»] scaffold0010 (1 HSPs)
scaffold0010 (846-921)||(34404-34479)
[»] scaffold1212 (1 HSPs)
scaffold1212 (846-921)||(1430-1505)
[»] scaffold0408 (1 HSPs)
scaffold0408 (865-921)||(5277-5333)
[»] scaffold0003 (2 HSPs)
scaffold0003 (195-275)||(325730-325810)
scaffold0003 (181-275)||(325322-325416)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 6e-58; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 301 - 500
Target Start/End: Original strand, 19405390 - 19405593
Alignment:
Q  301 ttaactcacgctggttttctttctctgaaccccaacact----aattgtatgtaattcatggtctttttctgcatcaaaaagttatggctatatacataa 396  Q
    ||||||||||   |||||||||||||||| |||| ||||    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  19405390 ttaactcacgtcagttttctttctctgaatcccatcactcaataattgtatgtaattcatggtctttttctgtatcaaaaacttatggctctatacataa 19405489  T
Q  397 actcagttgtctttatactatttaatgggtatcaatgttctagtacaactatttaatggaaatcaatattggaaaacaatattgaatgtcaaataaaatt 496  Q
    | ||||||||||||||||||||| |||| ||||||| ||| | ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| |    
T  19405490 agtcagttgtctttatactatttcatggatatcaatattcgaataccactatttaatggaaatcaataatggaaaacaataatgaatgtcaaataaaaat 19405589  T
Q  497 tggt 500  Q
    ||||    
T  19405590 tggt 19405593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 2811538 - 2811463
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2811538 catgttagtttttaggattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagaatgcaatgtg 2811463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 41071323 - 41071248
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| ||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||||    
T  41071323 catgttagtttttaggattgttagtgatgaattaagttaagaattgtagtttagatgttatttagagtgcaatgtg 41071248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 858 - 921
Target Start/End: Original strand, 7627143 - 7627206
Alignment:
Q  858 taggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  7627143 taggattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagaatgcattgtg 7627206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 846 - 913
Target Start/End: Complemental strand, 8694193 - 8694126
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| ||| || ||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  8694193 catgttagtttttagaattgttagtgatgaattaagttaggaactgtagtttagatgttgtttagagt 8694126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 846 - 913
Target Start/End: Complemental strand, 9046080 - 9046013
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| ||| || ||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  9046080 catgttagtttttagaattgttagtgatgaattaagttaggaactgtagtttagatgttgtttagagt 9046013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 325
Target Start/End: Complemental strand, 19405935 - 19405741
Alignment:
Q  128 tagaaaacttctcttctcctaataagatttgctcactcctaacaaaacttcaaaaaatatctccacgtaagttaattcacacagatgttaaaccaaacct 227  Q
    ||||||||| ||||||||| | |||| || ||||| ||| ||| |||||||  |||||| ||| | || |||||| | |  ||||||||||||| ||| |    
T  19405935 tagaaaactgctcttctcccattaagtttcgctcattcccaaccaaacttctcaaaatacctctatgtgagttaacttatgcagatgttaaacccaactt 19405836  T
Q  228 acttaagtcatgctggaatacaaccaacataacttaagtcacgctaaataatcacgctaaatctcaacgtaaattaactcacgctggttttctttctc 325  Q
    |||||||||| |||| ||||||||| || | ||||||||   |||||| | ||||  |||| | |||||| | |||||| |||| |||||||||||||    
T  19405835 acttaagtcacgctgaaatacaacctacgtgacttaagt---gctaaaaactcacaataaaccccaacgtcagttaacttacgcaggttttctttctc 19405741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 921
Target Start/End: Complemental strand, 47829935 - 47829879
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||    
T  47829935 gttagtgataaattaagttaggaattgtagtttaaatgttgtttagaatgcaatgtg 47829879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 53630117 - 53630192
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||| |||||| |||||||||||||||||||| |||||||    
T  53630117 catgttagttttgatgattgttagtgatgaattaatttaggaattgttgtttagatgttgtttagagtacaatgtg 53630192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 865 - 921
Target Start/End: Complemental strand, 34440397 - 34440341
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  34440397 gttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtg 34440341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 913
Target Start/End: Original strand, 17075514 - 17075581
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| ||||||  ||| |||| |||||||||||||||||| ||||| |||||| |||||||    
T  17075514 catgttagtttttaggatttttaatgatcaattaagttagaaattgttgtttacatgttgattagagt 17075581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 870 - 913
Target Start/End: Complemental strand, 25157879 - 25157836
Alignment:
Q  870 tgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    |||| |||||||||||||||||| |||||||||||| |||||||    
T  25157879 tgatgaattaagttagaaattgttgtttagatgttgattagagt 25157836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 301 - 472
Target Start/End: Original strand, 31532685 - 31532855
Alignment:
Q  301 ttaactcacgctggttttctttctctgaaccccaacact----aattgtatgtaattcatggtctttt-tctgcatcaaaaagttatggctatatacata 395  Q
    |||| ||||| ||||||||| ||||||||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  31532685 ttaagtcacgttggttttctctctctgaaccccaacactcaataattgtatgtaattcatggtcttttttctgcatcaaaaagttatggctctatacata 31532784  T
Q  396 aactcagttgtctttatactatttaatgggtatcaatgttctagtacaactatttaatggaaatcaatattggaaaa 472  Q
    || |||||||||||||||||||||||||| |||||      ||||||||||||||||||||||||||||| ||||||    
T  31532785 aattcagttgtctttatactatttaatggatatca------tagtacaactatttaatggaaatcaatatgggaaaa 31532855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 392 - 500
Target Start/End: Complemental strand, 31533094 - 31532985
Alignment:
Q  392 cataaactcagttgtctttatactatttaatggg-tatcaatgttctagtacaactatttaatggaaatcaatattggaaaacaatattgaatgtcaaat 490  Q
    |||||| | ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31533094 cataaagtgagttgtctttatactatttaatgtgatatcaatattctagtacaactatttaatgaaaatcaatattggaaaacaatattgaatgtcaaat 31532995  T
Q  491 aaaatttggt 500  Q
    |||| |||||    
T  31532994 aaaaattggt 31532985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 31534000 - 31533903
Alignment:
Q  304 actcacgctggttttctttctctgaaccccaacact----aattgtatgtaattcatggtctttttctgcatcaaaaagttatggctatatacataaa 397  Q
    |||||| | |||||||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  31534000 actcacaccggttttctttttctgaaccccaacactcaataattgtatgtaattcatggtctttttctgcatcaaaaagttattgctctatacataaa 31533903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 31020798 - 31020873
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  31020798 catgttagtttttaggcttgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtgcattgtg 31020873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 846 - 914
Target Start/End: Original strand, 19222642 - 19222710
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtg 914  Q
    ||||||||||| |||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  19222642 catgttagtttttaggattgttagtgatgaattaagttaggaattatagtttagatgttgtttagagtg 19222710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 700 - 787
Target Start/End: Original strand, 31020623 - 31020710
Alignment:
Q  700 ttttttacgattttcatcattattgctccaatcaaactcaatttttactacaaaatcaagttaatgttgcttatcctattgcattgcc 787  Q
    ||||||||||||||| ||||| |||  |||||||| |||||| | ||| |||||||||||| | ||||||||||| ||||||||||||    
T  31020623 ttttttacgattttcttcattcttgtgccaatcaagctcaatatctaccacaaaatcaagtaagtgttgcttatcatattgcattgcc 31020710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 24122478 - 24122553
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| ||||||||| | |||| |||| ||||||| |||| ||||||||||||||| ||||||    
T  24122478 catgttagtttttaggattgttagtgatgatttaacttaggaattgtactttaaatgttgtttagagtgaaatgtg 24122553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 35007081 - 35007156
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  35007081 catgttagttttgatgattgttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtg 35007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 913
Target Start/End: Original strand, 701404 - 701471
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| |||||| |||| | || || || ||||||||||||||||||||||||| |||||||    
T  701404 catgttagtttttaggattgttaataatcaaatatgttagaaattgtagtttagatgttgattagagt 701471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 18790967 - 18790892
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||  ||| ||||||||||| ||||| | |||||||||||||||||||| ||||||    
T  18790967 catgttagttttgatgattgttaaagatgaattaagttaggaattgcattttagatgttgtttagagtgaaatgtg 18790892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 24211283 - 24211208
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||| ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  24211283 catgttaatttttaggatagttactgatgaattaagttaggaattgtagtttagatgttgtttagagtgcaatgtg 24211208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 467
Target Start/End: Complemental strand, 14093935 - 14093824
Alignment:
Q  358 gtctttttctgcatcaaaaagtt-atggctatatacataaactcagtt-gtctttatactatttaatgggtatcaatgttctagtacaactatttaatgg 455  Q
    |||||||||||||||||||| || |||||| ||| |||||| || ||| |||||||| ||||||||||| || |||| || |||||| ||||||||||||    
T  14093935 gtctttttctgcatcaaaaactttatggctctattcataaagtctgtttgtctttattctatttaatggataacaatattatagtactactatttaatgg 14093836  T
Q  456 aaatcaatattg 467  Q
    ||||||||||||    
T  14093835 aaatcaatattg 14093824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 7963886 - 7963774
Alignment:
Q  213 tgttaaaccaaacctacttaagtcatgctggaatacaaccaacataacttaagtcacgctaaataatcacgctaaatctcaacgtaaattaactcacgct 312  Q
    ||||||||| ||| ||||||| |||| ||||||||||||| || | ||||||| || |||||| | |||| ||||||| || ||||| |||||| |||||    
T  7963886 tgttaaacccaacttacttaaatcatactggaatacaacctacgtgacttaagccatgctaaaaactcacactaaatcccatcgtaagttaactgacgct 7963787  T
Q  313 ggttttctttctc 325  Q
    |||||||||||||    
T  7963786 ggttttctttctc 7963774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 848 - 919
Target Start/End: Original strand, 8431196 - 8431267
Alignment:
Q  848 tgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatg 919  Q
    ||||||||| |||||| |||||| || |||||||||||||||||||||||  |||||||||||  |||||||    
T  8431196 tgttagtttttaggattgttagtaatgaattaagttagaaattgtagtttgaatgttgtttaggatgcaatg 8431267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 846 - 911
Target Start/End: Original strand, 11799062 - 11799127
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttaga 911  Q
    ||||||| ||| |||||| ||||||||| ||||| ||||| |||||||||||||||||| ||||||    
T  11799062 catgttaatttttaggattgttagtgatgaattaggttaggaattgtagtttagatgttatttaga 11799127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 2740893 - 2740968
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||| |||||| ||||||| |||||||||||| |||||||    
T  2740893 catgttagttttgatgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtg 2740968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 847 - 921
Target Start/End: Original strand, 13272049 - 13272123
Alignment:
Q  847 atgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||  | ||| ||||||||| |||||| |||| |||||| ||||||| |||||||||||| |||||||    
T  13272049 atgttagttttgatgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtg 13272123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 913
Target Start/End: Complemental strand, 27348348 - 27348281
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| |||||| |||| |||| || || ||||| |||| |||||||| |||||||||||||    
T  27348348 catgttagtttttaggattgttactgataaaatatgttaggaattatagtttaggtgttgtttagagt 27348281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 619
Target Start/End: Complemental strand, 15238983 - 15238942
Alignment:
Q  578 ccaactgaatggacaaaaatactcccgcgtgacttaagtcac 619  Q
    |||||||||| ||| ||| |||||||||||||||||||||||    
T  15238983 ccaactgaattgacgaaagtactcccgcgtgacttaagtcac 15238942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 851 - 919
Target Start/End: Original strand, 16995645 - 16995713
Alignment:
Q  851 tagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatg 919  Q
    |||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  16995645 tagtttttaggattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtgcaatg 16995713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 22721423 - 22721497
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| |||||| || ||||||||||  |||||||||||||||||||||||||||| ||||||    
T  22721423 catgttagttt-taggattgttagtaatgaattaagttaagaattgtagtttagatgttgtttagagtgaaatgtg 22721497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 913
Target Start/End: Original strand, 26489035 - 26489102
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| |||||| ||||||||| ||||||||||| ||| |||||||||| |||| |||||||    
T  26489035 catgttagtttttaggattgttagtgatgaattaagttaggaatggtagtttagaagttgattagagt 26489102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 10529251 - 10529326
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||| |||||| ||||||| |||||||||||| |||||||    
T  10529251 catgttagttttgatgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtg 10529326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 14094916 - 14094991
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| | |||| |||| |||||| |||||||||||||||||||| |||||||    
T  14094916 catgttagttttgatgattgttagtgatgagttaacttaggaattgttgtttagatgttgtttagagtacaatgtg 14094991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 37230065 - 37229990
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||| |||||| ||||||| |||||||||||| |||||||    
T  37230065 catgttagttttgatgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtg 37229990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 13987386 - 13987467
Alignment:
Q  190 ccacgtaagttaattcacacagatgttaaaccaaacct-acttaagtcatgctggaatacaaccaacataacttaagtcacg 270  Q
    |||||||| |||| |||| ||| ||||||||| ||| | ||||||||||||||||||||||||| || | | ||||||||||    
T  13987386 ccacgtaacttaagtcacgcaggtgttaaacccaacgtgacttaagtcatgctggaatacaacctacgtgatttaagtcacg 13987467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 16728756 - 16728681
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  16728756 catgttagtttttagaattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtccaatgtg 16728681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 17705828 - 17705753
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  17705828 catgttagtttttagaattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtccaatgtg 17705753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 17715813 - 17715738
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| ||| || ||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||    
T  17715813 catgttagtttttagaattgttagtgatgaattaagttaggaattgtagtttatatgttgtttagagtccaatgtg 17715738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 846 - 920
Target Start/End: Complemental strand, 6715980 - 6715906
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgt 920  Q
    |||||||| || ||||||  |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  6715980 catgttaggttttaggattattagtgatgaattaagttaggaattgtagtttagatgttgtttaaagtgcaatgt 6715906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 870 - 921
Target Start/End: Complemental strand, 15826345 - 15826294
Alignment:
Q  870 tgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  15826345 tgatgaattaagttaggaattgtagtttagatgttgtttagagtgcaatgtg 15826294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 21066031 - 21065956
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| ||||||| | ||||||||||| || ||| |||||||||||||||||||| |||||||    
T  21066031 catgttagtttttaggattgttagtggtgaattaagttaggaactgttgtttagatgttgtttagagtacaatgtg 21065956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 913
Target Start/End: Original strand, 12625281 - 12625348
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    |||||||||||   |||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  12625281 catgttagttttatggattgttagtgatgaattaagttataaattgtagtttagatgttatttagagt 12625348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 38455396 - 38455471
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  38455396 catgttagttttgatgattgttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtg 38455471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 914
Target Start/End: Complemental strand, 8230021 - 8229953
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtg 914  Q
    ||||||||||| || ||| ||||||||| ||||||||||| ||||||| |||||| ||||||| |||||    
T  8230021 catgttagtttttatgattgttagtgatgaattaagttaggaattgtattttagaagttgtttggagtg 8229953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 918
Target Start/End: Original strand, 39561357 - 39561429
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaat 918  Q
    |||| |||||| |||||| ||||||||| ||||||||||   |||| ||||||||||||||||||||| ||||    
T  39561357 catgatagtttttaggattgttagtgatgaattaagttatgcattgcagtttagatgttgtttagagtccaat 39561429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 13553100 - 13553175
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| || ||| ||||||||  |||||| |||| |||||| ||||||||||| |||||||| |||||||    
T  13553100 catgttagtttttatgattgttagtgacgaattaacttaggaattgttgtttagatgttatttagagtacaatgtg 13553175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 8525238 - 8525163
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||  |||||| |||| |||||| ||||||||||||||||| || |||||||    
T  8525238 catgttagttttgatgatggttagtgacgaattaacttaggaattgttgtttagatgttgtttagggtacaatgtg 8525163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 886 - 921
Target Start/End: Complemental strand, 25770402 - 25770367
Alignment:
Q  886 aaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25770402 aaattgtagtttagatgttatttagagtgcaatgtg 25770367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 886 - 921
Target Start/End: Complemental strand, 25775969 - 25775934
Alignment:
Q  886 aaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25775969 aaattgtagtttagatgttatttagagtgcaatgtg 25775934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 847 - 913
Target Start/End: Complemental strand, 23555626 - 23555560
Alignment:
Q  847 atgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    |||||||||| |||||| | || |||| |||||||||||||| ||| |||||| ||||| |||||||    
T  23555626 atgttagtttttaggattgctaatgatgaattaagttagaaaatgttgtttagttgttgattagagt 23555560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 846 - 913
Target Start/End: Original strand, 19810756 - 19810823
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    ||||||||||| |||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  19810756 catgttagtttttaggattgttaatgatgaattaagttagaaattgtagttgagatgttgtttagagt 19810823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 38649869 - 38649944
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||  || ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  38649869 catgttagttattaagattgttagtgatgaattaagttaggaattgtagtttagatgttgtttagagtgaaatgtg 38649944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 846 - 910
Target Start/End: Original strand, 19819748 - 19819812
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttag 910  Q
    ||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||||||||||||||    
T  19819748 catgttagtttttaggattgttaatgatgaattaagttaggaattgtagtttagatgttgtttag 19819812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 13505519 - 13505444
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| ||||||||| ||||||||||  || |||||||||||||||||| ||| |||||||||    
T  13505519 catgttagtttttaggattgttagtgatgaattaagttatgaactgtagtttagatgttgttaagaatgcaatgtg 13505444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 877 - 921
Target Start/End: Complemental strand, 6826508 - 6826464
Alignment:
Q  877 ttaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6826508 ttaagttagaaattgtagtttagatgttgtttagagtgcagtgtg 6826464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 921
Target Start/End: Complemental strand, 42562884 - 42562828
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||    
T  42562884 gttagtgatgaattaacttagaaattgttgtttagatgttgtttagagtacaatgtg 42562828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 32310065 - 32309990
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||| |||||| ||||||| |||||||||||| |||||||    
T  32310065 catgttagttttgatgattgttagtgatgaattaacttaggaattgttgtttagaagttgtttagagtacaatgtg 32309990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 846 - 919
Target Start/End: Complemental strand, 850346 - 850273
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatg 919  Q
    |||||||||||  | ||| |||||| || |||||| |||| |||||| ||||||| |||||||||||| |||||    
T  850346 catgttagttttgatgattgttagtaatgaattaacttaggaattgttgtttagaagttgtttagagtacaatg 850273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 11807886 - 11807811
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||| ||||||||||||| ||||||    
T  11807886 catgttagtatgtaggattgttagtgatgaattaagatagcaattgtagtttagaagttgtttagagtgtaatgtg 11807811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 858 - 921
Target Start/End: Complemental strand, 18206800 - 18206737
Alignment:
Q  858 taggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||| ||||||||| ||||||||||| || ||| |||||||||||||||||||| |||||||    
T  18206800 taggattgttagtgatgaattaagttaggaactgttgtttagatgttgtttagagtacaatgtg 18206737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 865 - 921
Target Start/End: Complemental strand, 15424382 - 15424326
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| |||||| |||| ||||||| ||||||||||||||||||||| |||||    
T  15424382 gttagtgatgaattaaattaggaattgtaatttagatgttgtttagagtgctatgtg 15424326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 914
Target Start/End: Complemental strand, 31119223 - 31119155
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtg 914  Q
    ||||||||||| || ||| ||||||||| ||||||||||| ||| |||  |||||||||||||||||||    
T  31119223 catgttagtttttatgattgttagtgatgaattaagttaggaatagtatattagatgttgtttagagtg 31119155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 860 - 913
Target Start/End: Complemental strand, 27757204 - 27757151
Alignment:
Q  860 ggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagt 913  Q
    |||| |||| |||| || |||||||||||||||||||||||||||| |||||||    
T  27757204 ggattgttaatgatcaaataagttagaaattgtagtttagatgttgattagagt 27757151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 878 - 913
Target Start/End: Complemental strand, 9193839 - 9193804
Alignment:
Q  878 taagttagaaattgtagtttagatgttgtttagagt 913  Q
    |||||||||||||||||||||||||||| |||||||    
T  9193839 taagttagaaattgtagtttagatgttgattagagt 9193804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 846 - 904
Target Start/End: Original strand, 27333017 - 27333075
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgtt 904  Q
    |||||||||||   |||| ||||||||||||||||  ||| ||||||||||||||||||    
T  27333017 catgttagttttatggattgttagtgattaattaatgtaggaattgtagtttagatgtt 27333075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 865 - 919
Target Start/End: Original strand, 28033600 - 28033654
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatg 919  Q
    |||||||||| ||||| |||| |||||| ||||||| |||||||||||| |||||    
T  28033600 gttagtgattgattaacttaggaattgttgtttagaagttgtttagagtacaatg 28033654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 43785063 - 43784988
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| |||||| |||| |||| ||||||||||| || ||| |||||||||||||||||||| |||||||    
T  43785063 catgttagtttttaggattgttactgatgaattaagttaggaactgttgtttagatgttgtttagagtacaatgtg 43784988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 848 - 921
Target Start/End: Complemental strand, 24965713 - 24965640
Alignment:
Q  848 tgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||  | ||| ||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  24965713 tgttagttttgatgattgttagtgataaattaagttagaaaatgtattttagatgttgtttagagtgaaatgtg 24965640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 20007524 - 20007449
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| |||| |||| |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  20007524 catgttagttttgatgattgttaatgataaattaagttagaaaatgtattttagatgttgtttagagtgaaatgtg 20007449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 50907571 - 50907646
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||| |||||| |||||||||||||||||||| |||||||    
T  50907571 catgttagttttgatgattgttagtgatgaattaacttaggaattgttgtttagatgttgtttagagtacaatgtg 50907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 865 - 921
Target Start/End: Original strand, 48955644 - 48955700
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| ||||||||||| ||||||| | |||||||||||||||||| ||||||    
T  48955644 gttagtgatgaattaagttaggaattgtattgtagatgttgtttagagtgaaatgtg 48955700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 865 - 921
Target Start/End: Original strand, 48997024 - 48997080
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  48997024 gttagtgatgaattaacttagaaattgttgtttagaagttgtttagagtacaatgtg 48997080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 846 - 904
Target Start/End: Original strand, 51391710 - 51391768
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgtt 904  Q
    ||||||||||| || |||  ||| |||| ||||||||||| ||||||||||||||||||    
T  51391710 catgttagtttttaagattcttaatgatgaattaagttaggaattgtagtttagatgtt 51391768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 846 - 899
Target Start/End: Complemental strand, 3377890 - 3377837
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttag 899  Q
    ||||||||||| || |||  |||||||| ||||||||||| |||||||||||||    
T  3377890 catgttagtttttaagattattagtgatgaattaagttaggaattgtagtttag 3377837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 848 - 921
Target Start/End: Complemental strand, 75034 - 74961
Alignment:
Q  848 tgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||  | ||| ||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  75034 tgttagttttgatgattgttagtgataaattaagttagaaaatgtattttagatgttgtttagagtgaaatgtg 74961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 877 - 921
Target Start/End: Original strand, 13765 - 13809
Alignment:
Q  877 ttaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  13765 ttaagttagaaattgtagtttagatgttgtttagagtgcagtgtg 13809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 34479 - 34404
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||||| || ||| ||||||||| ||||||||||| ||| |||  ||||||||||||||||||| ||||||    
T  34479 catgttagtttttatgattgttagtgatgaattaagttaggaatagtatattagatgttgtttagagtgaaatgtg 34404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 846 - 921
Target Start/End: Complemental strand, 1505 - 1430
Alignment:
Q  846 catgttagtttgtaggatagttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    |||||||||||  | ||| ||||||||| |||||| |||  |||||| |||||||||||||||||||| |||||||    
T  1505 catgttagttttgatgattgttagtgatgaattaacttatgaattgttgtttagatgttgtttagagtacaatgtg 1430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 865 - 921
Target Start/End: Original strand, 5277 - 5333
Alignment:
Q  865 gttagtgattaattaagttagaaattgtagtttagatgttgtttagagtgcaatgtg 921  Q
    ||||||||| | |||| |||| |||||| |||||||||||||||||||| |||||||    
T  5277 gttagtgatgagttaacttaggaattgttgtttagatgttgtttagagtacaatgtg 5333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 325810 - 325730
Alignment:
Q  195 taagttaattcacacagatgttaaaccaaacctacttaagtcatgctggaatacaaccaacataacttaagtcacgctaaa 275  Q
    |||||||| | || ||| ||||||| | ||| ||||||| ||| |||| ||||||||| |||| |||||||||||||||||    
T  325810 taagttaacttacgcaggtgttaaatccaacttacttaaatcacgctgaaatacaacctacatgacttaagtcacgctaaa 325730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 325322 - 325416
Alignment:
Q  181 aaaatatctccacgtaagttaattcacacagatgttaaaccaaacctacttaagtcatgctggaatacaaccaacataacttaagtcacgctaaa 275  Q
    |||||| |||||||| |||||| |||| ||| ||||||||| ||| |||||||||||  ||| |||| |||| || | | ||||||||| |||||    
T  325322 aaaatacctccacgtgagttaactcacgcaggtgttaaacccaacttacttaagtcacactgaaatataacctacgtgatttaagtcacactaaa 325416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University