View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_20 (Length: 517)
Name: NF18974_low_20
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 14736080 - 14736572
Alignment:
| Q |
1 |
caaatatgatgtgtaccgcatagagtttttcgatgagagatcagagtaatgatagaagtaatgtcgcatatattgtgatgagtagagagaagtatagtta |
100 |
Q |
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| T |
14736080 |
caaatatgatgtgtaccgcatagagtttttccatgagagatcagagtactg------------tcgcatatattgggatgagtagagagaagtatagtta |
14736167 |
T |
|
| Q |
101 |
acgggaccatcaaccgggttattgggagatcgtatgcgatattaagagacttaatgaaggtattcaagtgttagtgacctaagacagagttgtacaaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14736168 |
acgggaccatcaaccgggttattgggagatcgtatgcgatattcagagacttaatgaaggtattcaagtgttagtgacctaagacagagttgtacaaata |
14736267 |
T |
|
| Q |
201 |
agtggattaaggaacttactaacaaatgccaaatgtattggcgtgtttggttttgtttttctccatctccgaggtgtatgagccaccacataaatcataa |
300 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
14736268 |
agtggattaaggaacttactaacaaatgtcagatgtattggcgtgtttggttttgtttttctctatctccgaggtgtatgagccaccacacaaatcataa |
14736367 |
T |
|
| Q |
301 |
ccaaggaaatgtgttatggaaattattcagcttgaggaattgaagattttctgattttggaaaagcacccatttatctatcaacccaagttagatatttt |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14736368 |
ccaagaaaatgtgttatggaaattattcagcttgaggaattgaagattttctgattttggaaaagcactcatttatctatcaacccaagttagatatttt |
14736467 |
T |
|
| Q |
401 |
tgaatgctatgtcgtcaagaccaagattaggaacgtcatttaagaatattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgac |
500 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14736468 |
tgaatgatatgtcgtcaagaccaagattaggaacgtcatttaagaatattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgac |
14736567 |
T |
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