View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_21 (Length: 513)
Name: NF18974_low_21
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Original strand, 9167863 - 9168343
Alignment:
| Q |
15 |
acagatagtaatagtaagtaatattcttcaatatgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaatattcaactg |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9167863 |
acagataataatagtaagtaatattcttcaaaatgaaaagatgaagtctacttaccacaactgatatcaattcccaatggagttgtgcaatagtcaactg |
9167962 |
T |
|
| Q |
115 |
tacatacaagacctccgctgtcgtaattcatgtagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9167963 |
tacatacaagacctccgctgtcgtaattcatgtagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatcc |
9168062 |
T |
|
| Q |
215 |
atagcttagaaatcgatgaatttccacatatgaaaaatgttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcgg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168063 |
atagcttagaaatcgatgaatttccacatatgaaaaaggttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcgg |
9168162 |
T |
|
| Q |
315 |
caaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccaaataca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9168163 |
caaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccacataca |
9168262 |
T |
|
| Q |
415 |
taggatcgttcttcagttgcttgttacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggat |
495 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168263 |
taggatcgttcttcagttgcttgctacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggat |
9168343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 47 - 463
Target Start/End: Complemental strand, 9307502 - 9307086
Alignment:
| Q |
47 |
atgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaatattcaactgtacatacaagacctccgctgtcgtaattcatg |
146 |
Q |
| |
|
||||||||||||| |||||||||||||| | || | || ||||||||||||| |||||| ||| | |||||||||| |||| || ||||| |||| |
|
|
| T |
9307502 |
atgaaaagatgaaatctacttaccacaatttatttgaagtcccaatggagttatgcaatcatcattttgacatacaagatatccggcgttgtaatccatg |
9307403 |
T |
|
| Q |
147 |
tagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaatcgatgaatttccacatatg |
246 |
Q |
| |
|
|||||||||| | ||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||| || | |
|
|
| T |
9307402 |
aagcagttttgattgttattgtcacaatgatcttcacaaccacgtctcatccacgaaagttcaaatccatagcttagaagtctatgaatttccttgtacg |
9307303 |
T |
|
| Q |
247 |
aaaaatgttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattcaatttaacaactctaaagtc |
346 |
Q |
| |
|
|||| |||| | | || ||| |||||| ||||||||| |||||||||| |||||| |||||||||||||| |||| | |||| |||||||| |
|
|
| T |
9307302 |
gaaaaggttgtcttccctcggtgacgattaaagctggagctgatgatatagtaacaatcttcacacggcaaccaacatttaattcaccaacactaaagtc |
9307203 |
T |
|
| Q |
347 |
cccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttc |
446 |
Q |
| |
|
|| | |||||||||||| ||||||||||||| | ||||| | |||||||| ||||||||||| |||| |||||||||||||| ||| ||| |||||||| |
|
|
| T |
9307202 |
cctatcaattgcataaacatagctgttatttgcagagttgattctacacggagatgtatccacgtacagaggatcgttcttcacttgattgctacagttc |
9307103 |
T |
|
| Q |
447 |
aagtatactacatgctc |
463 |
Q |
| |
|
||||||| ||| ||||| |
|
|
| T |
9307102 |
aagtatattacgtgctc |
9307086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 331
Target Start/End: Complemental strand, 9475842 - 9475678
Alignment:
| Q |
167 |
gtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaatcgatgaatttccacatatgaaaaatgttgaaaatctttc |
266 |
Q |
| |
|
||||||| |||||||||||| || | |||||||||| |||||||||||||||||| | || ||||||||| | || |||||||| || ||| || |
|
|
| T |
9475842 |
gtcacaaaaatcttcacaagcacgtgtaatccacgaaatttcaaatccatagcttagcattccgtgaatttccgcgtaagaaaaatggtgttgatcactc |
9475743 |
T |
|
| Q |
267 |
ttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattcaattt |
331 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||| ||||| ||| ||| ||||| |
|
|
| T |
9475742 |
cgagagataaaagcaggagctgctgacatagcaacaagcttcacgtggcaatcaatatttaattt |
9475678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University