View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_23 (Length: 502)

Name: NF18974_low_23
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_23
NF18974_low_23
[»] chr3 (14 HSPs)
chr3 (1-489)||(18030928-18031419)
chr3 (3-245)||(26117006-26117248)
chr3 (282-487)||(27370631-27370836)
chr3 (3-191)||(26239324-26239512)
chr3 (3-410)||(26144845-26145252)
chr3 (295-481)||(27344175-27344361)
chr3 (441-487)||(27400692-27400738)
chr3 (439-488)||(26183213-26183262)
chr3 (315-452)||(27400940-27401077)
chr3 (98-268)||(18080972-18081142)
chr3 (282-347)||(18723184-18723249)
chr3 (426-487)||(26211848-26211909)
chr3 (439-487)||(26239055-26239103)
chr3 (3-47)||(27401318-27401362)
[»] scaffold1344 (1 HSPs)
scaffold1344 (295-487)||(862-1054)
[»] scaffold0854 (2 HSPs)
scaffold0854 (296-481)||(3949-4134)
scaffold0854 (3-128)||(4284-4409)
[»] scaffold0043 (1 HSPs)
scaffold0043 (295-350)||(73023-73078)


Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 18031419 - 18030928
Alignment:
Q  1 aattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031419 aattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaa 18031320  T
Q  101 atgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagcctggtacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031319 atgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagcctggtacag 18031220  T
Q  201 ctggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagagtgga---tgacaagattgaggaaatagacgatggtg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  18031219 ctggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagagtggatattgacaagattgaggaaatagacaatggtg 18031120  T
Q  298 ataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctctc 397  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031119 ataatgataaaatgaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctctc 18031020  T
Q  398 tgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttg 489  Q
    |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18031019 tgctcaagaccttttgttaccagagtcaatcatgatagaaagttgtgataagctggaatacatatttggtaaacaccaagatgtccaacttg 18030928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 26117248 - 26117006
Alignment:
Q  3 ttggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaat 102  Q
    ||||||||||| ||||| ||| | |||| ||| |||||  |||||||||||||| | |||| | | || |||||||| | ||| |||||| |||||||||    
T  26117248 ttggaagaattatgcaatggtcccatctcctttgactcaatgaacaatttagaggagctatatgtgaacgagtgtaaaaatttgcaaagcttgtttaaat 26117149  T
Q  103 gcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagcctggtacagct 202  Q
    ||||||| |||||| |||| ||||||    |||| |||  ||||||| ||| |||||||||||||||||| ||  | ||| |||||||| ||   | | |    
T  26117148 gcagcctaaatctcagcaatctaaagaccgtgacactaatatcatgctcaagattggtttctgtttttgaactgtccacttctcaaagcttgccgctgtt 26117049  T
Q  203 ggagagcttggaaataagtcaatgtgagaaattagaaaacata 245  Q
    ||||   |||||||||| | | ||||||||||| |||||||||    
T  26117048 ggaggaattggaaataattgattgtgagaaattggaaaacata 26117006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 487
Target Start/End: Original strand, 27370631 - 27370836
Alignment:
Q  282 gaaatagacgatggtgataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaa 381  Q
    |||||||  ||||||||||||||||| ||  |||||| ||||||||||||| |||| |||||| ||||||| ||  ||  ||| |||  ||||| ||       
T  27370631 gaaatagttgatggtgataatgataataacgatagttacaactcaatgtttccaaatctgaaatttctcaatattattcgatgccccaaattacaatttg 27370730  T
Q  382 tatttccatttctctctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgt 481  Q
    || |||||| |  || ||||  |||| ||||||||| | | || ||  ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  27370731 tacttccatgttactatgctggagactttttgttactagaatctatatggatacaaaattgtgatgagctggaatacatatttggccaacaccaagatgt 27370830  T
Q  482 ccaact 487  Q
     |||||    
T  27370831 tcaact 27370836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 26239512 - 26239324
Alignment:
Q  3 ttggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaat 102  Q
    ||||||||||| ||||| ||| | |||  ||| |||||   ||||||||||||||| |||||||||||||||||| | | ||| | |||| |||||||||    
T  26239512 ttggaagaattatgcaatggtcccatcgcctttgactcaacgaacaatttagagaagctatctatcaaggagtgtgaaaatttgcgaagcttgtttaaat 26239413  T
Q  103 gcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagc 191  Q
    ||||||| |||||| |||  ||||||    ||    |||||  |||| ||| |||||||||||||||||| ||| ||||| ||||||||    
T  26239412 gcagcctaaatctcagcagtctaaagactgtggaattagaacaatgctcaaaattggtttctgtttttgaactatcaacttctcaaagc 26239324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 3 - 410
Target Start/End: Complemental strand, 26145252 - 26144845
Alignment:
Q  3 ttggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaat 102  Q
    ||||||||||| ||||| ||| | |||| ||| |||||  |||||| ||||||| | || | ||| ||||||||| | | ||| |||||| |||||||||    
T  26145252 ttggaagaattatgcaatggtcccatctcctttgactcaatgaacactttagaggagctgtatattaaggagtgtgaaaatttgcaaagcttgtttaaat 26145153  T
Q  103 gcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagcctggtacagct 202  Q
    ||||||| |||||| |||| ||||||    |||   || |||||||| ||| ||||||||||||||||||  |  | ||| |||||||| |   || | |    
T  26145152 gcagcctaaatctcagcaatctaaagactgtgaaattaaaatcatgctcaagattggtttctgtttttgaaatgtccacttctcaaagctttccactgtt 26145053  T
Q  203 ggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagag---tggatgacaagattgaggaaatagacgatggtgat 299  Q
    |||||  ||| |||||| | | ||||||||||| ||||||||| | ||   |||||||||||   |||||||||   |||| | |  || ||||||| ||    
T  26145052 ggagaaattgaaaataattgattgtgagaaattggaaaacataatcacatttgaaaggagagtgatggatgacacagttgaagtatcagccgatggttat 26144953  T
Q  300 aatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaa-tgtcccctattacgatcaatatttccatttctctct 398  Q
    |||||||| |||   |||||| ||||| ||||| |||| |||||||||||  | || | |||| |||| || ||||| ||  ||| ||||| ||||||||    
T  26144952 aatgataacaag---agttgctactcattgtttccaaatctgaaagttcttcatat-tgtgaattgtcgccaattacaattcatacttccaattctctct 26144857  T
Q  399 gctcaagacctt 410  Q
    ||||||||||||    
T  26144856 gctcaagacctt 26144845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 295 - 481
Target Start/End: Original strand, 27344175 - 27344361
Alignment:
Q  295 gtgataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttct 394  Q
    ||||||||||||| || ||||||||||||||||||||| |||| |||||| ||||    ||     |||||| || ||||| ||  ||| |||||| ||     
T  27344175 gtgataatgataataacaatagttgcaactcaatgtttccaaatctgaaatttctttgtattgaaaaatgtcaccaattacaatttatacttccatgtca 27344274  T
Q  395 ctctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgt 481  Q
    |||||||  |||| ||||||||| | | || |||| ||||  |||||||||  ||||| | ||||||||||| ||||||||||||||    
T  27344275 ctctgctggagactttttgttactagaatctatcatgataagaagttgtgacgagctgaagtacatatttggccaacaccaagatgt 27344361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 27400738 - 27400692
Alignment:
Q  441 tgtgataagctggaatacatatttggtcaacaccaagatgtccaact 487  Q
    |||||||||||| || |||||||||||||||||||||||||||||||    
T  27400738 tgtgataagctgaaacacatatttggtcaacaccaagatgtccaact 27400692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 26183262 - 26183213
Alignment:
Q  439 gttgtgataagctggaatacatatttggtcaacaccaagatgtccaactt 488  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  26183262 gttgtgacaagctggaatacatatttggccaacaccaagatgtcaaactt 26183213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 452
Target Start/End: Complemental strand, 27401077 - 27400940
Alignment:
Q  315 agttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctctctgctcaagaccttttgt 414  Q
    |||||||||||||||||| |||| |||||||||||||  || | | |||| || | ||||| ||  ||| |||||| || |||||||  | |||||||||    
T  27401077 agttgcaactcaatgtttccaaacctgaaagttctcagtatttatcaatgccctcaattacaatttatacttccatatcactctgctggaaaccttttgt 27400978  T
Q  415 taccaaagtcaatcaggatacaaagttgtgataagctg 452  Q
     || | | || |||| ||||||||||||||||||||||    
T  27400977 cactagaatctatcatgatacaaagttgtgataagctg 27400940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 18081142 - 18080972
Alignment:
Q  98 taaatgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagcctggta 197  Q
    |||||||||||| |||||  |||| || ||| |  |||| ||| ||||||| ||||| ||||||||||||||||| ||  ||||  ||| ||||||| |     
T  18081142 taaatgcagcctaaatcttcgcaatctgaagaacatgaccctaaaatcatgtccaacgttggtttctgtttttgacctgtcaacatctcgaagcctgctg 18081043  T
Q  198 cagctggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagagtgga 268  Q
    | | |||||||||||||||||| | | ||  | | ||| ||||||||| ||||   |||||||||||||||    
T  18081042 ctgttggagagcttggaaataattgattgcaaaatattggaaaacataattacatgtgaaaggagagtgga 18080972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 18723249 - 18723184
Alignment:
Q  282 gaaatagacgatggtgataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagtt 347  Q
    |||||||  ||||||||||||||||| || || | |||||||||||||||| |||| |||||||||    
T  18723249 gaaatagttgatggtgataatgataacaacaaaatttgcaactcaatgtttccaaatctgaaagtt 18723184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 487
Target Start/End: Complemental strand, 26211909 - 26211848
Alignment:
Q  426 atcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaact 487  Q
    ||||| ||| || ||||||| |||||| ||||||||||||| ||||||||||||||| ||||    
T  26211909 atcagaataaaatgttgtgacaagctgaaatacatatttggccaacaccaagatgtcaaact 26211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 26239103 - 26239055
Alignment:
Q  439 gttgtgataagctggaatacatatttggtcaacaccaagatgtccaact 487  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| ||||    
T  26239103 gttgtgacaagctgaaatacatatttggccaacaccaagatgtcaaact 26239055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 27401362 - 27401318
Alignment:
Q  3 ttggaagaattgtgcaacggttcaatcttcttggactctctgaac 47  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||    
T  27401362 ttggaagaattgtgcaacggttccatctccatggactctctgaac 27401318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 487
Target Start/End: Original strand, 862 - 1054
Alignment:
Q  295 gtgataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttct 394  Q
    ||||||||||||| || ||||||||||||||||||||| |||| |||||| |||||   ||     |||||| |  ||||| ||  ||| |||||| ||     
T  862 gtgataatgataataaaaatagttgcaactcaatgtttccaaatctgaaatttctctgtattgaaaaatgtcacaaattacaatttatacttccatgtca 961  T
Q  395 ctctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaact 487  Q
    |||||||  |||| ||||||||| | | |  |||| |||| ||| |||| |||||||||| ||||||||||| ||||||||||||||| ||||    
T  962 ctctgctggagactttttgttactagaatatatcaagatagaaaattgtcataagctggagtacatatttggccaacaccaagatgtcaaact 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 481
Target Start/End: Complemental strand, 4134 - 3949
Alignment:
Q  296 tgataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctc 395  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||| |||||   ||    ||||||  || ||||| ||  | | ||||||||| |    
T  4134 tgataatgataaaaacaaaagttgcaactcaatgtttccaaatctgaaatttctctgtattgaagaatgtgaccaattacaatttacacttccatttcac 4035  T
Q  396 tctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgt 481  Q
    ||||||  |||| ||||||||| | | || |||| |||||||   |||  | ||||| ||||||||||||| ||||||||||||||    
T  4034 tctgctggagactttttgttactagaatctatcaagatacaattatgttttgagctgaaatacatatttggccaacaccaagatgt 3949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 4409 - 4284
Alignment:
Q  3 ttggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaat 102  Q
    ||||||||||| ||||| ||| | |||||||| |||||| |||||||||||||| | ||| |||||  | | |||   ||||| | |||| |||||||||    
T  4409 ttggaagaattatgcaatggtcccatcttctttgactctatgaacaatttagaggagctaactatcttgaaatgtggaattttgcgaagcttgtttaaat 4310  T
Q  103 gcagcctgaatctctgcaagctaaag 128  Q
    ||||| | ||| ||||||| ||||||    
T  4309 gcagcataaatttctgcaatctaaag 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 73078 - 73023
Alignment:
Q  295 gtgataatgataaaaagaatagttgcaactcaatgttttcaaagctgaaagttctc 350  Q
    ||||||||||||| || ||||||||||||||||||||| ||||  ||||| |||||    
T  73078 gtgataatgataataacaatagttgcaactcaatgtttccaaatttgaaatttctc 73023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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