View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_29 (Length: 464)

Name: NF18974_low_29
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_29
NF18974_low_29
[»] chr7 (2 HSPs)
chr7 (8-445)||(44501197-44501634)
chr7 (252-340)||(32413624-32413712)
[»] chr3 (12 HSPs)
chr3 (158-363)||(45870386-45870593)
chr3 (12-345)||(20994819-20995154)
chr3 (158-345)||(20981806-20981995)
chr3 (167-222)||(20977477-20977532)
chr3 (149-361)||(45856777-45856991)
chr3 (143-222)||(2996371-2996450)
chr3 (252-307)||(25601740-25601795)
chr3 (69-222)||(20949493-20949649)
chr3 (93-219)||(20948805-20948934)
chr3 (284-342)||(778229-778287)
chr3 (259-340)||(25596902-25596983)
chr3 (149-217)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (155-363)||(3978077-3978287)
[»] chr5 (4 HSPs)
chr5 (71-349)||(7894982-7895264)
chr5 (133-363)||(38142015-38142247)
chr5 (58-132)||(7976609-7976683)
chr5 (311-363)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (251-361)||(33844279-33844389)
chr6 (252-309)||(33840288-33840345)
chr6 (252-340)||(7115536-7115624)
chr6 (252-340)||(7120608-7120696)
chr6 (252-340)||(7124012-7124100)
chr6 (284-340)||(7140758-7140814)
chr6 (284-340)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (251-339)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 44501197 - 44501634
Alignment:
Q  8 tgagatgaaaatatgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  44501197 tgagatgaaaatatgctaggcggaatttgtgcattgtcagcatggacactaagtcctgaccgctggactatgtgtgaaatagcacaattcacaatccttt 44501296  T
Q  108 tgagtaggtgaaactccaagcgaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501297 tgagtaggtgaaactccaagcaaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 44501396  T
Q  208 gaatatcttgtaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 307  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501397 gaatatcttgaaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 44501496  T
Q  308 gtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcagtctttacttacactctcagtgagttttaatttcttc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44501497 gtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcggtctttacttacactctcagtgagttttaatttcttc 44501596  T
Q  408 tttgtcggtcgaattattatctcacttgacattctgat 445  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44501597 tttgtcggtcgaattattatctcacttgacattctgat 44501634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 32413712 - 32413624
Alignment:
Q  252 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    |||||||| ||||| |||| ||||||||| | ||||||||||||||| ||||| |||| |||||  |||||| | || |||||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 363
Target Start/End: Original strand, 45870386 - 45870593
Alignment:
Q  158 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 255  Q
    |||||||||||||||||  | |||||||||||| |||| || ||| |  |||||||||| |||||  |||| ||   |||||||  |||||| | |||||    
T  45870386 agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa 45870485  T
Q  256 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcagg 355  Q
    ||||||||||||||||| |  |||| || || |||| |||||| ||||| |||| |||||||||| |||| |||||||||||||||||||  ||||||||    
T  45870486 gacgtttccaaagatccgtatatcttggtgataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataacacagtcagg 45870585  T
Q  356 taagtcgc 363  Q
    || |||||    
T  45870586 taggtcgc 45870593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 20994819 - 20995154
Alignment:
Q  12 atgaaaatatgctaggcggaatttgtgcattgtcagcaag-gacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttga 110  Q
    ||||||||| |||| | |||||||| ||| ||||| |||| ||||| ||||  | || ||||||| |||||| |||||||  ||||||||||| |||| |    
T  20994819 atgaaaataagctatgaggaatttgcgcaatgtca-caagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcacaatctttttaa 20994917  T
Q  111 gtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttatt 207  Q
    ||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| ||||||||||||| |  |    
T  20994918 gt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggt 20995014  T
Q  208 gaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaaca 305  Q
    |||||||||| ||||  |||| |||  |  |||| ||  ||| ||||||||||||||||||||||||||  || | ||||| ||||  ||||| ||||||    
T  20995015 gaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacacaagtttgaaca 20995114  T
Q  306 gcgtttttggcattcaaaaaagacagtatgtgaaggataa 345  Q
    |||| |||||  |||| ||| || || |||||||||||||    
T  20995115 gcgtctttggtgttcagaaaggagagaatgtgaaggataa 20995154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 345
Target Start/End: Original strand, 20981806 - 20981995
Alignment:
Q  158 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 255  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| |  ||||||||||| || |  |||| |||  |  ||||  | |||| |||||||    
T  20981806 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaa 20981905  T
Q  256 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 345  Q
    |||||||||||||||| ||  || | ||||| ||||  ||||| |||||||| | |||||  |||| ||| || || |||||||||||||    
T  20981906 gacgtttccaaagatctttatatattggggataaaacacaagtttgaacagcatgtttggtgttcagaaaggagagaatgtgaaggataa 20981995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 20977532 - 20977477
Alignment:
Q  167 gaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 222  Q
    ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  20977532 gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagt 20977477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 361
Target Start/End: Original strand, 45856777 - 45856991
Alignment:
Q  149 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aa 246  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||| ||||  |||| ||  | |||  | ||  ||    
T  45856777 agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaa 45856876  T
Q  247 gtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataat 346  Q
    |    |||||  ||||||| ||||||||  |||| |||||||||||||||||   ||| |||| ||| || |||| ||||||||||||||| ||||||||    
T  45856877 gatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaaccgcgtctttagcgttcagaaaagacagtatgtggaggataat 45856976  T
Q  347 gcagtcaggtaagtc 361  Q
      ||||| |||||||    
T  45856977 atagtcatgtaagtc 45856991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 2996371 - 2996450
Alignment:
Q  143 aaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 222  Q
    |||| |||||| || | ||| ||||||||||||  ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  2996371 aaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagt 2996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  252 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 307  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 20949649 - 20949493
Alignment:
Q  69 gctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagat 165  Q
    ||||||| ||||||  ||||||  ||||||||||||||||||||| ||||  ||| || |||||| ||||  ||| ||| | | |||  | || || |||    
T  20949649 gctggacattgtgtttaatagcgtaattcacaatccttttgagtatgtgaggctctaaacgaccaatatgatgcttaaaatcaagagcttataatgtgat 20949550  T
Q  166 agaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 222  Q
    |||||||||   |||||||||||  ||||||||||||||  ||||||||||||||||    
T  20949549 agaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagt 20949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 20948934 - 20948805
Alignment:
Q  93 aattcacaatccttttgagtaggtgaaactccaagcgaccattatggc---tgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaac 189  Q
    |||||||||||||||| |||| ||||  ||| |||||| || |||| |   | ||||  |||||||||| || |||||||| |||  ||||||||||||     
T  20948934 aattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagggatcacgaagagataaaat 20948835  T
Q  190 cttagacacgaatttattgaatatcttgta 219  Q
    ||||||||| || ||  |||||||||||||    
T  20948834 cttagacacaaacttggtgaatatcttgta 20948805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 778229 - 778287
Alignment:
Q  284 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 342  Q
    ||||||||||||||| || || || | |||||| ||||||||||| |||||||||||||    
T  778229 ggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatgtgaagga 778287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 25596983 - 25596902
Alignment:
Q  259 gtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    |||||||||||| ||||||||| |  |||||||||||||| ||||| || |  |||| ||||||||| ||||  ||||||||    
T  25596983 gtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaag 25596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 45881805 - 45881873
Alignment:
Q  149 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttg 217  Q
    |||||||| |||| ||||||||||||    |||||||||||||| ||||| |||||  |||||||||||    
T  45881805 agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg 45881873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 363
Target Start/End: Complemental strand, 3978287 - 3978077
Alignment:
Q  155 tgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcag 252  Q
    ||||||| ||||||||||||| ||||| ||||||| |||||||| ||| |  ||||| |||||||||    ||| |||||||||||| ||  ||| | ||    
T  3978287 tgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtag 3978188  T
Q  253 gaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtc 352  Q
    ||||||||||||||||||||||  |||| | ||| |||| |||||| ||||| ||||  ||||  || ||||| || ||||||||||| |||||||  ||    
T  3978187 gaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttc 3978088  T
Q  353 aggtaagtcgc 363  Q
    |||||||||||    
T  3978087 aggtaagtcgc 3978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 349
Target Start/End: Complemental strand, 7895264 - 7894982
Alignment:
Q  71 tggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatggctg--aaattga-gagtgtgtagtgagatag 167  Q
    ||||| |||||| |||||||| |||||||||| |||||||||| ||||  ||| |||||||||  || |||   ||||| | |||  || |||  || ||    
T  7895264 tggacattgtgtgaaatagcataattcacaattcttttgagtaagtgaggctctaagcgaccagcattgctattaaattcaagagcctgcagtttgacag 7895165  T
Q  168 aggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttcca 265  Q
    |||||| | |||||||||||||||||||||| |||||  ||||| || |||||    ||||||||| |||||   ||  ||| || || ||| |||||||    
T  7895164 aggaattgcgaagagataaaaccttagacacaaattttgtgaatttcgtgtaaaatcgaaaatctgtagaatcgaatctaagagcgggtagaagtttcca 7895065  T
Q  266 aagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgca 349  Q
     |||| ||||||||||   |||||||||||||| ||||| || | ||||||||||||||| || || |||||||||||||||||    
T  7895064 gagattcttccatctgatagacaaaatgcaagt-tgaacggcttgtttggcattcaaaaaggaaagaatgtgaaggataatgca 7894982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 363
Target Start/End: Original strand, 38142015 - 38142247
Alignment:
Q  133 attatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgta-agtgtgaaaatc 231  Q
    |||||| ||||||||||||| ||  |||| || |||||||||  |||||| ||||||| ||  ||||||||| |||||||||  ||| |||  |||| ||    
T  38142015 attatgtctgaaattgagagagttcagtgcgagagaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatc-ggtatagttcgaaagtc 38142113  T
Q  232 tgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagac 329  Q
    |||||||| |  |||||| ||||||||| ||||||| |||||| |||||||   ||||| |||  ||||   ||| || | ||| || |||||||| ||     
T  38142114 tgaagaatccaatataagagcaggaagaagtttccatagatccctccatcttaaggacagaattgaagttgtaactgcctgtttagcgttcaaaaaggag 38142213  T
Q  330 agtatgtgaaggataatgcagtcaggtaagtcgc 363  Q
    ||||||||||||||||  ||||||||||||||||    
T  38142214 agtatgtgaaggataacacagtcaggtaagtcgc 38142247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 7976609 - 7976683
Alignment:
Q  58 aagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgacc 132  Q
    ||||||| || ||||||| |||||| |||||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  7976609 aagtcctaaccgctggacattgtgtgaaatagcataattcacaatccttttgagtaagtgaggctctaagcgacc 7976683  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 7976853 - 7976905
Alignment:
Q  311 tttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 363  Q
    |||||| |||||||| || || ||||||||||||||||| || ||||||||||    
T  7976853 tttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgc 7976905  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 361
Target Start/End: Original strand, 33844279 - 33844389
Alignment:
Q  251 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcag 350  Q
    ||||| ||||||||| ||||  |||||||||| ||||||||||||||| ||||| ||||||| ||  |||||||| ||||  |||| ||  | |||||||    
T  33844279 aggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcag 33844378  T
Q  351 tcaggtaagtc 361  Q
    || ||||||||    
T  33844379 tcgggtaagtc 33844389  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 33840288 - 33840345
Alignment:
Q  252 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 309  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 33840345  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 7115536 - 7115624
Alignment:
Q  252 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7115624  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 7120608 - 7120696
Alignment:
Q  252 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7120696  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 7124012 - 7124100
Alignment:
Q  252 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7124100  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 7140758 - 7140814
Alignment:
Q  284 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  7140758 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 8680372 - 8680428
Alignment:
Q  284 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 340  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  8680372 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 43864048 - 43864136
Alignment:
Q  251 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaa 339  Q
    ||||||||  ||||||||||   |||||||   ||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||    
T  43864048 aggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

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