View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_30 (Length: 462)
Name: NF18974_low_30
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 3432603 - 3432176
Alignment:
| Q |
16 |
atcaaggagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432603 |
atcaaggagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttatt |
3432504 |
T |
|
| Q |
116 |
aatgataaagataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432503 |
aatgataaagataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatatta |
3432404 |
T |
|
| Q |
216 |
atagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaagg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432403 |
atagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaagg |
3432304 |
T |
|
| Q |
316 |
acttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432303 |
acttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaa |
3432204 |
T |
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| Q |
416 |
ggaggaccacactgatatatgtatgcat |
443 |
Q |
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| T |
3432203 |
ggaggaccacactgatatatgtatgcat |
3432176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 3426433 - 3426073
Alignment:
| Q |
16 |
atcaaggagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttatt |
115 |
Q |
| |
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|||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||| |
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| T |
3426433 |
atcaaggagcaagaaggagaaggaagaaaaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcatt |
3426334 |
T |
|
| Q |
116 |
aatgataaagat---aaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaata |
212 |
Q |
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|||||| ||||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | |
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| T |
3426333 |
aatgatgaagatgataaggtgattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaaga |
3426234 |
T |
|
| Q |
213 |
ttaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaa |
312 |
Q |
| |
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||||||| ||| || ||||||||||||| ||| ||||||||||||||| ||| |||||||| || ||||||||||||||||| |||||||| ||||| |
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| T |
3426233 |
ctaatagttgtttaagggttggattaacggatttgttggaagatttgggagctgaggatgatgatagcgttgtggttactttggtaccaaggtatgggaa |
3426134 |
T |
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| Q |
313 |
aggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccactt |
373 |
Q |
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|||| |||| ||||||||||| || | |||||||||||||| |||||||||| ||||||| |
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| T |
3426133 |
aggaattgtcaaaatcagaaatatcaagatagagcttgaagattgaaaatttctaccactt |
3426073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 11897861 - 11898230
Alignment:
| Q |
16 |
atcaaggagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttatt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||| |
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| T |
11897861 |
atcaaggagcaaaacggagaaggaagaagaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcatt |
11897960 |
T |
|
| Q |
116 |
aatgataaagat---aaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaata |
212 |
Q |
| |
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|||||| ||||| |||| | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | |
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| T |
11897961 |
aatgatgaagatgctaaggagattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaaga |
11898060 |
T |
|
| Q |
213 |
ttaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaa |
312 |
Q |
| |
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|||||| ||| || ||||||||||||| ||| || |||||||||||| ||| |||||||| || |||||||||||||||||||||||||| |||| |
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| T |
11898061 |
ctaatagctgtttaagggttggattaacggatttgttgaaagatttgggagctgaggatgatgatagcattgtggttactttggttccaaggtacaggaa |
11898160 |
T |
|
| Q |
313 |
aggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
382 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11898161 |
aggacttgttaaaatcacaaacattaagatagagcttgaaggttgaaaatttggaccacttgatatatat |
11898230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 202 - 382
Target Start/End: Original strand, 11913093 - 11913272
Alignment:
| Q |
202 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttcca |
301 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtgttgtggttactttggttcca |
11913192 |
T |
|
| Q |
302 |
aggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
382 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| | || |||||| |||||||| ||| |||||||||||||||| |
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| T |
11913193 |
tggtaagggaaaggacttgttaaaatcacaaacattaaca-agtccttgaaagttgaaaacttggaccacttgatatatat |
11913272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 11912936 - 11913066
Alignment:
| Q |
19 |
aaggagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaat |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||||||||||| | |||||||||||||||||||||||||| |
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| T |
11912936 |
aaggagcaaaaaggagaaggaagaagaggaagaggtttcagcgattaaagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaat |
11913035 |
T |
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| Q |
119 |
gataaagataaggtggttaagccatttaatac |
150 |
Q |
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||| || ||||||||||||||||||||||||| |
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| T |
11913036 |
gatgaa-ataaggtggttaagccatttaatac |
11913066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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