View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_31 (Length: 451)

Name: NF18974_low_31
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_31
NF18974_low_31
[»] chr7 (27 HSPs)
chr7 (1-384)||(21787111-21787509)
chr7 (24-166)||(21667038-21667180)
chr7 (2-166)||(21658160-21658324)
chr7 (9-165)||(21789877-21790033)
chr7 (278-408)||(21746565-21746698)
chr7 (9-168)||(21630484-21630643)
chr7 (28-250)||(21994970-21995202)
chr7 (1-113)||(21773583-21773695)
chr7 (9-166)||(15715338-15715494)
chr7 (269-405)||(21803282-21803420)
chr7 (24-113)||(21793530-21793619)
chr7 (9-166)||(21765634-21765791)
chr7 (9-166)||(21706008-21706165)
chr7 (36-140)||(21698175-21698279)
chr7 (281-438)||(21648449-21648607)
chr7 (358-443)||(21728385-21728468)
chr7 (9-119)||(21803514-21803624)
chr7 (307-373)||(21667273-21667342)
chr7 (358-440)||(21683615-21683695)
chr7 (307-373)||(21698398-21698463)
chr7 (29-151)||(21746376-21746491)
chr7 (65-113)||(21653621-21653669)
chr7 (65-128)||(21648294-21648357)
chr7 (358-440)||(21717678-21717758)
chr7 (348-388)||(21794176-21794216)
chr7 (407-440)||(21793810-21793843)
chr7 (267-304)||(21794112-21794149)
[»] scaffold0182 (1 HSPs)
scaffold0182 (9-161)||(26978-27130)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 21787111 - 21787509
Alignment:
Q  1 gcaatacatggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcat 100  Q
    ||||||||||||| ||   ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21787111 gcaatacatggatagcagagggttttcacacttacttcagcaatccttgggccattattgcattcattgctgcgtttactgcccttgttcttactttcat 21787210  T
Q  101 tcagacatggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttcatacgaataaaatttcgtaac------------- 187  Q
    ||| ||||||||| |  |||| |||||| ||  |||||||||||||||||| |||||||||||||||||| | ||||| ||||||||                 
T  21787211 tcaaacatggtttacggttaacccggctagcaaataaaggtggttcgttatggcaatgttgctttcatacaattaaaaattcgtaacaaaaataggtcga 21787310  T
Q  188 gtttgagttggtaatgcaccacgcataataattgccttctggtaaggcaagtagtgtacttcacttctctg--gattttgttgaattttttagttaagtt 285  Q
    || || ||||||| ||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||  |||| | ||||||||||  ||||||||    
T  21787311 gtatgtgttggtattgcaccgtgcataataattgtcttctggtaaggcaagtagtgtactttacttctctgtggattgttttgaatttttgcgttaagtt 21787410  T
Q  286 ggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgccttttctgtgttgtgtgtttgaattgaaacatgaattttcatatttc 384  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21787411 ggtgtgtcccttcatgagtcttgactatgagtatctcagaaataaagagtgccttttctgtgttgtttgtttgaattgaaacatgaattttcatatttc 21787509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 21667038 - 21667180
Alignment:
Q  24 tttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacatggtttgcaattaatc 123  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| | ||| | |    
T  21667038 tttcacacttacttcagcagtccttgggccattactgcattccttgctgcgtttatcgccattgttcttactttcattcagacatggtttacgattcacc 21667137  T
Q  124 cggcttgctgataaaggtggttcgttatagcaatgttgctttc 166  Q
    ||||||||| |||||||||| |||||||  |||||||| ||||    
T  21667138 cggcttgctaataaaggtggctcgttatgacaatgttgttttc 21667180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 21658160 - 21658324
Alignment:
Q  2 caatacatggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcatt 101  Q
    |||||| ||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  21658160 caatacttggatagcgcagggttttcatacttacttcagcagtccttgggccattattgcattcactgctgcggttatcgcccttgttcttactttcatt 21658259  T
Q  102 cagacatggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttc 166  Q
    |||||||||||| ||||| | |||||| ||  ||||| ||| ||||||||  |||||||| ||||    
T  21658260 cagacatggtttacaattcaaccggctagcaaataaatgtgattcgttatgacaatgttgttttc 21658324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 21789877 - 21790033
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||| ||||    
T  21789877 tggatagcgctgggttttcacacttacttcagtaatccttgggccattattgcattccttgctgcgtttatcgcccttgctctaactttcattcaaacat 21789976  T
Q  109 ggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgcttt 165  Q
    |||||||  || | ||||||||||  ||||||||||| ||||| |||||||||||||    
T  21789977 ggtttgcggttgacccggcttgctagtaaaggtggtttgttatggcaatgttgcttt 21790033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 278 - 408
Target Start/End: Original strand, 21746565 - 21746698
Alignment:
Q  278 gttaagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgccttt---tctgtgttgtgtgtttgaattgaaacatgaatt 374  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||   | |||| || |||||||||||||||||||||||    
T  21746565 gttaagtttgtgtgtcccttcttgagtcttgactatgagtatttcaaaaataaagagtgtctttttctttgtgatgagtgtttgaattgaaacatgaatt 21746664  T
Q  375 ttcatatttcaagttaatttatttaaattaatat 408  Q
    ||||||||||||||||||||||| |||| |||||    
T  21746665 ttcatatttcaagttaatttattcaaataaatat 21746698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 21630484 - 21630643
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||    
T  21630484 tggatagcgcagggttttcacacttacttcaacagtccttgggccattattgcattcattgctgcggttgtcgtccttgttcttactttcattcagacat 21630583  T
Q  109 ggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttcat 168  Q
    ||||| ||||| | ||| || ||  ||||| ||| ||||||||  |||||||| ||||||    
T  21630584 ggtttacaattcacccgactagcaaataaaagtgattcgttatgacaatgttgttttcat 21630643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 21994970 - 21995202
Alignment:
Q  28 acacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacatggtttgcaattaatccggc 127  Q
    ||||||||||||||| |||||||||| | ||||||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||| || || | |||||    
T  21994970 acacttacttcagcaatccttgggccttcattgcattcgttgctgcatttatcgcccttgctcttactttaattcagacatggtttacagttcaaccggc 21995069  T
Q  128 ttgctgataaaggtggttcgttatagcaatgttgctttcatacgaataaaatttcgtaac--------gt---ttgagttggtaatgcaccacgcataat 216  Q
    | |   |||||||||||| ||||| |||||||||||||| || || ||||||||||||||        ||    || ||||||||| |||||| ||||||    
T  21995070 tagtaaataaaggtggtttgttatggcaatgttgctttcttaagattaaaatttcgtaacaaaaataggtcaagtgtgttggtaatacaccacacataat 21995169  T
Q  217 aattgccttctggtaaggcaagtagtgtacttca 250  Q
    ||||| ||||||||||||||||| ||||||||||    
T  21995170 aattgtcttctggtaaggcaagt-gtgtacttca 21995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21773583 - 21773695
Alignment:
Q  1 gcaatacatggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcat 100  Q
    ||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||  | | ||| |||||||||||||||||    
T  21773583 gcaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctctcatcgcgcttgttcttactttcat 21773682  T
Q  101 tcagacatggttt 113  Q
    |||||||||||||    
T  21773683 tcagacatggttt 21773695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 15715338 - 15715494
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| |||| ||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  15715338 tggatagcgcagggttttcacacttacttcagcaatccttgggccattactgcattccttgctgcgtttatcgcccttgctcttactttcattcagacat 15715437  T
Q  109 ggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttc 166  Q
    | ||| |  |||| ||| || ||  | ||||||||||||||||  |||||||| ||||    
T  15715438 gatttactgttaacccgcctagc-aaaaaaggtggttcgttatgacaatgttgttttc 15715494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 269 - 405
Target Start/End: Complemental strand, 21803420 - 21803282
Alignment:
Q  269 aattttttagttaagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgcctttt-ctgtgt--tgtgtgtttgaattgaa 365  Q
    |||||||  |||||||| | |||||| |||||||||||||||||||||||| ||| |||||||| | ||||||| || |||  |||||||||||||||||    
T  21803420 aatttttgggttaagtttgagtgtcc-ttcttgagtcttgactatgagtatttcaaaaataaagtgagcctttttctttgtaatgtgtgtttgaattgaa 21803322  T
Q  366 acatgaattttcatatttcaagttaatttatttaaattaa 405  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  21803321 acatgaattttcatattttaagttaatttattcaaattaa 21803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 21793530 - 21793619
Alignment:
Q  24 tttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacatggttt 113  Q
    ||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  21793530 tttcacactcacttcagcaatccttgggccattactgcattccttgctgcgtttatcgcccttgctcttactttcattcagacatggttt 21793619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 21765634 - 21765791
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| |||||||| |||| ||||||||||| || ||||||| || ||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||||||    
T  21765634 tggatagcgctgggttttcgcacttacttcaacaatccttggaccgttattgccttccttgctgcatttactgcccttgctcttactttcattcagacat 21765733  T
Q  109 ggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttc 166  Q
    ||||| |  || | |||||| ||  |||| |||||||||||||  |||||||| ||||    
T  21765734 ggtttacggttcacccggctagcaaataatggtggttcgttatgacaatgttgttttc 21765791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 21706008 - 21706165
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| |||||||| ||||  |||||||| | || |||||||||| ||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||||||    
T  21706008 tggatagcgctgggttttcgtacttacttaaacaatccttgggccgttattgccttccttgctgcttttactgcccttgctcttactttcattcagacat 21706107  T
Q  109 ggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttc 166  Q
    ||||| || || | ||||||  |  ||||||||| ||||||||  |||||||| ||||    
T  21706108 ggtttacagttcacccggctaacaaataaaggtgcttcgttatgacaatgttgttttc 21706165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 21698175 - 21698279
Alignment:
Q  36 ttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacatggtttgcaattaatccggcttgctgat 135  Q
    ||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||| |||||||||||| |||| | ||| | |||||||||  ||    
T  21698175 ttcagcagtccttggaccattattgcattcagtgctgcgtctatcgcccttgttcttactctcattcagacattgtttacgattcacccggcttgcaaat 21698274  T
Q  136 aaagg 140  Q
    |||||    
T  21698275 aaagg 21698279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 438
Target Start/End: Original strand, 21648449 - 21648607
Alignment:
Q  281 aagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgccttttc---tgtgttgtgtgtttgaattgaaacatgaattttc 377  Q
    ||||||| |||| ||||||| ||||||||||||| |||| |   |||| ||||||| |||||    |||| ||||| |  ||||||||||||||||||||    
T  21648449 aagttggcgtgtaccttctttagtcttgactatgtgtatttataaaatgaagagtgtctttttgattgtgctgtgtataagaattgaaacatgaattttc 21648548  T
Q  378 atatttcaagttaatttatttaaattaatatattctcatagatgatctgcgtgtttctata 438  Q
    |||||||||||||||||||| ||||||   |||||||||| | ||||| ||||||||||||    
T  21648549 atatttcaagttaatttattcaaatta--ttattctcataaacgatctacgtgtttctata 21648607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 21728385 - 21728468
Alignment:
Q  358 gaattgaaacatgaattttcatatttcaagttaatttatttaaattaatatattctcatagatgatctgcgtgtttctatattctt 443  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||   |||||||||| | ||||| |||||||||||||||||    
T  21728385 gaattgaaacatgaactttcatatttcaagttaatttattcaaatta--ttattctcataaacgatctacgtgtttctatattctt 21728468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 21803624 - 21803514
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| ||| |||| |||| ||||||||||| || ||||||| |||||||||||||| ||||||| ||||  ||||| | ||||||||||||||||||||    
T  21803624 tggatagcgttgggttttcgcacttacttcaacaatccttggaccattattgcattccttgctgcatttattgccctcgctcttactttcattcagacat 21803525  T
Q  109 ggtttgcaatt 119  Q
     |||| |||||    
T  21803524 tgtttacaatt 21803514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 21667273 - 21667342
Alignment:
Q  307 tgactatgagtatctcagaaataaagagtgcctttt---ctgtgttgtgtgtttgaattgaaacatgaat 373  Q
    ||||||||||||| ||| ||||||||||||||||||   |||| ||||||||||||||||||||||||||    
T  21667273 tgactatgagtatttcaaaaataaagagtgccttttttcctgtattgtgtgtttgaattgaaacatgaat 21667342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 21683615 - 21683695
Alignment:
Q  358 gaattgaaacatgaattttcatatttcaagttaatttatttaaattaatatattctcatagatgatctgcgtgtttctatatt 440  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||   |||||||||| | ||||| | ||||||||||||    
T  21683615 gaattgaaacatgaattttcatatttcaacttaatttattcaaatta--ttattctcataaacgatctacatgtttctatatt 21683695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 21698398 - 21698463
Alignment:
Q  307 tgactatgagtatctcagaaataaagagtgcc-ttttctgtgttgtgtgtttgaattgaaacatgaat 373  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21698398 tgactatgagta-ctcaaaaataaagagtgcctttttctgtgttgtgtg-ttgaattgaaacatgaat 21698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 21746376 - 21746491
Alignment:
Q  29 cacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacatggtttgcaattaatccggct 128  Q
    ||||||||||| || |||||||||| ||||||||||| || |||| ||||  |||||||      |||||||||||||||||||||||||| | ||||||    
T  21746376 cacttacttcaacaatccttgggccgttattgcattcgttcctgcatttattgcccttg------ctttcattcagacatggtttgcaattcacccggct 21746469  T
Q  129 tgctgataaaggtggttcgttat 151  Q
     ||  |||||||||||| |||||    
T  21746470 agc-aataaaggtggttagttat 21746491  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 21653621 - 21653669
Alignment:
Q  65 cattgctgcgtttaccgcccttgttcttactttcattcagacatggttt 113  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  21653621 cattgctgcggttatcgcccttgctcttactttcattcagacatggttt 21653669  T

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Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 21648294 - 21648357
Alignment:
Q  65 cattgctgcgtttaccgcccttgttcttactttcattcagacatggtttgcaattaatccggct 128  Q
    ||||||||| |||| |||||||| |||||||||||||||||||  |||||||||| | ||||||    
T  21648294 cattgctgcatttatcgcccttgctcttactttcattcagacagtgtttgcaattcacccggct 21648357  T

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Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 21717678 - 21717758
Alignment:
Q  358 gaattgaaacatgaattttcatatttcaagttaatttatttaaattaatatattctcatagatgatctgcgtgtttctatatt 440  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||   |||||| | ||| ||||| ||| ||||||||||    
T  21717678 gaattgaaacatgaattttcatatattaagttaatttattcaaatta--ttattcttacagacgatctacgtatttctatatt 21717758  T

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Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 21794176 - 21794216
Alignment:
Q  348 ttgtgtgtttgaattgaaacatgaattttcatatttcaagt 388  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  21794176 ttgtctgtttgaattgaaacatgaattgtcatatttcaagt 21794216  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Original strand, 21793810 - 21793843
Alignment:
Q  407 atattctcatagatgatctgcgtgtttctatatt 440  Q
    ||||||||||||||||||| ||||||||||||||    
T  21793810 atattctcatagatgatctacgtgtttctatatt 21793843  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 21794112 - 21794149
Alignment:
Q  267 tgaattttttagttaagttggtgtgtcccttcttgagt 304  Q
    |||||||||  |||||||||||||||||||||||||||    
T  21794112 tgaatttttgggttaagttggtgtgtcccttcttgagt 21794149  T

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Target: scaffold0182 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 26978 - 27130
Alignment:
Q  9 tggatggcgctgggatttcacacttacttcagcagtccttgggccattattgcattcattgctgcgtttaccgcccttgttcttactttcattcagacat 108  Q
    ||||| ||| |||| |||| ||||||||||| || ||||||| || ||||||||||| ||| ||| ||||| ||||||| ||||||||||||||||||||    
T  26978 tggatagcgttgggttttcgcacttacttcaacaatccttggaccgttattgcattccttgttgcatttactgcccttgctcttactttcattcagacat 27077  T
Q  109 ggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttg 161  Q
    ||||| |  || | |||||| ||  |||||||| |||||||||  ||||||||    
T  27078 ggtttacggttcacccggctagcaaataaaggttgttcgttatgacaatgttg 27130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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