View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_34 (Length: 439)

Name: NF18974_low_34
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_34
NF18974_low_34
[»] chr8 (2 HSPs)
chr8 (237-424)||(33931936-33932123)
chr8 (11-154)||(33931710-33931853)
[»] chr3 (3 HSPs)
chr3 (20-75)||(13793771-13793826)
chr3 (65-109)||(35631467-35631511)
chr3 (65-109)||(42933658-42933702)
[»] chr2 (2 HSPs)
chr2 (65-109)||(6176508-6176552)
chr2 (66-139)||(8281729-8281802)
[»] chr4 (2 HSPs)
chr4 (84-131)||(19450451-19450498)
chr4 (72-133)||(28162672-28162734)
[»] chr5 (1 HSPs)
chr5 (65-109)||(11780636-11780680)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 237 - 424
Target Start/End: Original strand, 33931936 - 33932123
Alignment:
Q  237 ggtctaatttgaccatatgaactcataatataaacttgaaaattgacttgaccaaaccacaatataattttgcatcccttggtcaggggttctggttaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33931936 ggtctaatttgaccatatgaactcataatataaacttgaaaattgacttgaccaaaccacaatataattttgcatcccttggtcaggggttctggctaca 33932035  T
Q  337 ccactagttgtggttcaaagatttgaagtacaatatctggtttcagtagttcctctacttcttcttttttgtcattatgctatatatt 424  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33932036 ccactagttgttgttcaaagatttgaagtacaatatctggtttcagtagttcctctacttcttcttttttgtcattatgctatatatt 33932123  T

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Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 33931710 - 33931853
Alignment:
Q  11 gaacctgtggataagttgactaagagcagaaaagttagcagatttaagttacaatgtttgataaaattaacgattgaattagttgataaatataaaatgt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33931710 gaacctgtggataagttgactaagagcagaaaagttagcagatttaagttacaatgtttgataaaattaacgattgaattagttgataaatataaaatgt 33931809  T
Q  111 tatagaaaaatatttttaattaatgtttagtgttttccattaag 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33931810 tatagaaaaatatttttaattaatgtttagtgttttccattaag 33931853  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 13793826 - 13793771
Alignment:
Q  20 gataagttgactaagagcagaaaagttagcagatttaagttacaatgtttgataaa 75  Q
    ||||||||||| |||| |||||||||||||| |||||||||| | |||||||||||    
T  13793826 gataagttgacgaagaacagaaaagttagcaaatttaagttatagtgtttgataaa 13793771  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 35631511 - 35631467
Alignment:
Q  65 tgtttgataaaattaacgattgaattagttgataaatataaaatg 109  Q
    |||||||||||||||| | || |||||||||||||||||||||||    
T  35631511 tgtttgataaaattaatggttaaattagttgataaatataaaatg 35631467  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 42933658 - 42933702
Alignment:
Q  65 tgtttgataaaattaacgattgaattagttgataaatataaaatg 109  Q
    ||||||||||||||||| ||| |||||||| |||||||| |||||    
T  42933658 tgtttgataaaattaacaattaaattagtttataaatattaaatg 42933702  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 6176552 - 6176508
Alignment:
Q  65 tgtttgataaaattaacgattgaattagttgataaatataaaatg 109  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||    
T  6176552 tgtttgttaaaattagcgattgaattagttgataagtataaaatg 6176508  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 8281802 - 8281729
Alignment:
Q  66 gtttgataaaattaacgattgaattagttgataaatataaaatgttatagaaaaatatttttaattaatgttta 139  Q
    |||| ||||||||| |  ||||| ||||| ||||||||||||||  ||| ||| ||||||||||||||| ||||    
T  8281802 gttttataaaattaccagttgaaatagttcataaatataaaatgacataaaaatatatttttaattaatattta 8281729  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 19450451 - 19450498
Alignment:
Q  84 ttgaattagttgataaatataaaatgttatagaaaaatatttttaatt 131  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||    
T  19450451 ttgaactagttgataaatataaaatcacatagaaaaatatttttaatt 19450498  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 28162672 - 28162734
Alignment:
Q  72 taaaattaacgattgaattagttgataaatataaaatgttat-agaaaaatatttttaattaa 133  Q
    ||||||||||  |||||||||||||||||||| |||||  || | ||||||||||||||||||    
T  28162672 taaaattaactgttgaattagttgataaatatgaaatgacataaaaaaaatatttttaattaa 28162734  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 11780680 - 11780636
Alignment:
Q  65 tgtttgataaaattaacgattgaattagttgataaatataaaatg 109  Q
    |||||| |||||||| ||||| ||||||||||||||| |||||||    
T  11780680 tgtttggtaaaattagcgattcaattagttgataaatgtaaaatg 11780636  T

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