View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_36 (Length: 424)

Name: NF18974_low_36
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_36
NF18974_low_36
[»] chr3 (3 HSPs)
chr3 (268-408)||(16652751-16652891)
chr3 (268-408)||(7604743-7604883)
chr3 (268-382)||(19011672-19011786)
[»] chr2 (1 HSPs)
chr2 (268-408)||(27313617-27313757)
[»] chr8 (2 HSPs)
chr8 (268-408)||(9061888-9062028)
chr8 (267-408)||(27018746-27018888)
[»] chr7 (2 HSPs)
chr7 (267-408)||(24773398-24773538)
chr7 (268-408)||(35350092-35350233)
[»] chr5 (4 HSPs)
chr5 (267-408)||(33826378-33826518)
chr5 (268-408)||(2416276-2416417)
chr5 (266-408)||(39878950-39879093)
chr5 (268-408)||(39348660-39348803)
[»] chr1 (5 HSPs)
chr1 (268-408)||(38443782-38443923)
chr1 (267-408)||(4014503-4014645)
chr1 (313-408)||(15197658-15197753)
chr1 (351-408)||(25880898-25880957)
chr1 (267-329)||(25882691-25882753)
[»] chr6 (2 HSPs)
chr6 (268-408)||(921114-921255)
chr6 (268-408)||(2277169-2277312)
[»] scaffold0531 (1 HSPs)
scaffold0531 (268-408)||(10948-11091)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 16652891 - 16652751
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctct 367  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  16652891 actatattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 16652792  T
Q  368 cattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  16652791 cattattatagatctctgtgaatagaataagatgatgaaat 16652751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 7604743 - 7604883
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctct 367  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  7604743 actagattactaacccgtgcgccgcacgaattttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 7604842  T
Q  368 cattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7604843 cattattatagatctctgtgaatagaataagatgatgaaat 7604883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 268 - 382
Target Start/End: Complemental strand, 19011786 - 19011672
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctct 367  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  19011786 actatattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 19011687  T
Q  368 cattattatagatct 382  Q
    |||||||||||||||    
T  19011686 cattattatagatct 19011672  T

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Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 27313617 - 27313757
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  27313617 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 27313716  T
Q  368 cattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  27313717 cattattatagatctccgtgaatagaataagatgatgaaat 27313757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 9062028 - 9061888
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||    
T  9062028 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattatctct 9061929  T
Q  368 cattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  9061928 cattattatagatctccgtgaatagaataagatgatgaaat 9061888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 267 - 408
Target Start/End: Complemental strand, 27018888 - 27018746
Alignment:
Q  267 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt-nnnnnnnntgaacattacattatataatattgtct 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  27018888 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattacattatataatattgtct 27018789  T
Q  366 ctcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  27018788 ctcattattatagatctctatgaatagaataagatgatgaaat 27018746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 267 - 408
Target Start/End: Original strand, 24773398 - 24773538
Alignment:
Q  267 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctc 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||    
T  24773398 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt-aaaaaaatgaacattacattatataatattatctc 24773496  T
Q  367 tcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  24773497 tcattattatagatctctgtgaatagaataagatgatgaaat 24773538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 35350233 - 35350092
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt-nnnnnnnntgaacattacattatataatattgtctc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||| |||||||||||||||||||    
T  35350233 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattgcattatataatattgtctc 35350134  T
Q  367 tcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||| |||||||||||| || ||||||||||||||    
T  35350133 tcattattataaatctttgtgaatggagtaagatgatgaaat 35350092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 267 - 408
Target Start/End: Original strand, 33826378 - 33826518
Alignment:
Q  267 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctc 366  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  33826378 tactagattactaacccatgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaa-tgaacattacattatataatattgtctc 33826476  T
Q  367 tcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  33826477 tcattattatagatctctgtgaatagaataagatgatgaaat 33826518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 2416276 - 2416417
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaa-tttnnnnnnnntgaacattacattatataatattgtctc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||    
T  2416276 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattttaaaaaaaatgaacattacattatataatattgtctc 2416375  T
Q  367 tcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  2416376 tcattattatagatctccgtgagtagaataagatgatgaaat 2416417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 39879093 - 39878950
Alignment:
Q  266 ctactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtct 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||        |||||||||||||||||||||||||||    
T  39879093 ctactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacgatttcaaaaaaatgaacattacattatataatattgtct 39878994  T
Q  366 ctcattattatagatct-ttgtgaatagaataagatgatgaaat 408  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  39878993 ctcattattatagatctcccgtgaatagaataagatgatgaaat 39878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 39348803 - 39348660
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt---nnnnnnnntgaacattacattatataatattgtc 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||| |||||||||||||||||    
T  39348803 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaaaatgaacattgcattatataatattgtc 39348704  T
Q  365 tctcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||    
T  39348703 tctcattattataaatctctgtgaatagagtaagatgatgaaat 39348660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 38443923 - 38443782
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt-nnnnnnnntgaacattacattatataatattgtctc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  38443923 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattacattatataatattgtctc 38443824  T
Q  367 tcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  38443823 tcattattatagatctccgtgaatagaataagatgatgaaat 38443782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 267 - 408
Target Start/End: Complemental strand, 4014645 - 4014503
Alignment:
Q  267 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt-nnnnnnnntgaacattacattatataatattgtct 365  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         |||||||| ||||||||||||||||||    
T  4014645 tactagattactaacccgtgcgccgcacgggttttaagagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattgcattatataatattgtct 4014546  T
Q  366 ctcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    |||||||||||| |||| |||||||||| ||||||||||||||    
T  4014545 ctcattattataaatctctgtgaatagagtaagatgatgaaat 4014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 15197658 - 15197753
Alignment:
Q  313 aacattcgttaacaatttnnnnnnnntgaacattacattatataatattgtctctcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  15197658 aacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctctcattattatagatctccgtgaatagaataagatgatgaaat 15197753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 25880957 - 25880898
Alignment:
Q  351 tatataatattgtctctcattattataga--tctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||    
T  25880957 tatataatattgtctcttattattatagatctctttgtgaatagagtaagatgatgaaat 25880898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 25882753 - 25882691
Alignment:
Q  267 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatt 329  Q
    ||||||||| ||||||||  ||||||||| |||||||||||||| ||||||| | ||||||||    
T  25882753 tactagattgctaacccgcacgccgcacgagttttatgagatgacaaacatttgctaacaatt 25882691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 921255 - 921114
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttnnnnnnnn-tgaacattacattatataatattgtctc 366  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  921255 actagattactaacccgtgcgccgcacgagttttatgagatgaaaaacattcgttaacaattttaaaaaaaatgaacattacattatataatattgtctc 921156  T
Q  367 tcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  921155 tcattattatagatctccgtgaatagaataagatgatgaaat 921114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 2277312 - 2277169
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt---nnnnnnnntgaacattacattatataatattgtc 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||| |||||||||||||||||    
T  2277312 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaaaatgaacattgcattatataatattgtc 2277213  T
Q  365 tctcattattatagatctttgtgaatagaataagatgatgaaat 408  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||    
T  2277212 tctcattattataaatctctgtgaatagagtaagatgatgaaat 2277169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 10948 - 11091
Alignment:
Q  268 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattt--nnnnnnnntgaacattacattatataatattgtct 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||           ||||||||||||||||||||||||||    
T  10948 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaatattcgttaacaattttaaaaaaaatagaacattacattatataatattgtct 11047  T
Q  366 ctcattattatagatctttgtgaatagaat-aagatgatgaaat 408  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  11048 ctcattattatagatctctgtgaatagaataaagatgatgaaat 11091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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