View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_37 (Length: 420)
Name: NF18974_low_37
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 36397400 - 36397002
Alignment:
| Q |
13 |
aatatcttgact--gtgattgcaattgattgcggacatcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatag |
110 |
Q |
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| T |
36397400 |
aatatcttgactctgtgattgcaattgattgcggacatgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatag |
36397301 |
T |
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| Q |
111 |
aattataaacactaaacagacaatctggattgtgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattct |
210 |
Q |
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| T |
36397300 |
aattataaacactaaacagacaatttggattgtgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattct |
36397201 |
T |
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| Q |
211 |
atttctgatattttcttcggctccacacatgccatgccaatgtcaaaaacaatcaagttc-ttttatcactacatatgaacaaacacaaacaaaatccat |
309 |
Q |
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| T |
36397200 |
atttctgatattttcttcggctc--cacatgccatgccaatgtcaaaaacaatcaagttctttttatcactgcatatgaacaaacacaaacgaaatccat |
36397103 |
T |
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| Q |
310 |
tataattacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaactta |
409 |
Q |
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| T |
36397102 |
tataattacatgattgcatatgtataacaaagcataacaaattaactaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaactta |
36397003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 8455143 - 8455251
Alignment:
| Q |
302 |
aaatccattataattacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatataca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8455143 |
aaatccattataattacatgattgcatatgtataacaaagcaaaacaaattaactaatgctgtatcatcgtgcctttcttccacagggaaaaaatataca |
8455242 |
T |
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| Q |
402 |
tgaacttag |
410 |
Q |
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||||||||| |
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| T |
8455243 |
tgaacttag |
8455251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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