View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_38 (Length: 416)
Name: NF18974_low_38
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6153528 - 6153923
Alignment:
| Q |
1 |
aaatctcagagtctatccagaaagaaactgaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactac |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6153528 |
aaatctcagagtctatccagaaagaaacttaccagcctaacattaaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactac |
6153627 |
T |
|
| Q |
101 |
atgtttcattcatttattgagtttaatcaacatattaaaatcctaatacatgcgcatattcaaatctcataacccatattattttatgtttattaggaag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6153628 |
atgtttcattcatttattgagtttaatcaacatattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaag |
6153727 |
T |
|
| Q |
201 |
attatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6153728 |
attatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtcaagaatgtttg |
6153827 |
T |
|
| Q |
301 |
tccagtctgtaaggagatagctctgaggatttatgatgaagatgaataattgtttacttgagtggagattgttggtcttttaagtgtgagttaaaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
6153828 |
tccagtctgtaaggagatagctctgaggatttatgatgaagatgaataattgtttacttgagtggagattgttggtgttttaagtatgagttaaaa |
6153923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 135 - 313
Target Start/End: Complemental strand, 33800655 - 33800483
Alignment:
| Q |
135 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccatattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
234 |
Q |
| |
|
||||||||||||||| || |||||||||| | ||||||||| | || |||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
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|
| T |
33800655 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagacttga |
33800556 |
T |
|
| Q |
235 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
313 |
Q |
| |
|
||| | |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
33800555 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33800483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 6147422 - 6147597
Alignment:
| Q |
132 |
atattaaaatcctaatacatgcgcatattcaaatctcataacccatattattttatgtttattaggaagattatattgatggggagcgtattggaagact |
231 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||| | | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6147422 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaattttttttgtttattaggaagattatattgatggggagcatattggaagact |
6147521 |
T |
|
| Q |
232 |
tgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
313 |
Q |
| |
|
| |||||| ||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
6147522 |
taattgta------ctcacacatatcattttgattgcatcgaacaatggttgggggtgaagaatgtttgtccagtctgtaag |
6147597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 135 - 313
Target Start/End: Complemental strand, 33729538 - 33729366
Alignment:
| Q |
135 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccatattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
234 |
Q |
| |
|
||||||||||||||| || |||||||||| | ||||||||| | || |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
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|
| T |
33729538 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagatttga |
33729439 |
T |
|
| Q |
235 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
313 |
Q |
| |
|
||| | |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
33729438 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33729366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 6128226 - 6128402
Alignment:
| Q |
132 |
atattaaaatcctaatacatgcgcatattcaaatctcataacccata-ttattttatgtttattaggaagattatattgatggggagcgtattggaagac |
230 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||| | || |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6128226 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaatttttttttgtttattaggaagattatattgatggggagcatattggaagac |
6128325 |
T |
|
| Q |
231 |
ttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
313 |
Q |
| |
|
|| | || ||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||| |||||||| |
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|
| T |
6128326 |
ttcactg----cac--tcacatatatcatcttgattgcatcaaacaatggtttgaggtgaagaatgcttgtccattctgtaag |
6128402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 6147048 - 6147129
Alignment:
| Q |
35 |
gcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6147048 |
gcctaatattgaggaaacaagcacaatgaatcaaatatgcaccatatgtcaggtgaggtcaactacatgtttcattcattta |
6147129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 33801140 - 33801062
Alignment:
| Q |
14 |
tatccagaaagaaactgaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
92 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33801140 |
tatccagcaagaaacttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33801062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 33730023 - 33729946
Alignment:
| Q |
15 |
atccagaaagaaactgaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
92 |
Q |
| |
|
|||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33730023 |
atccagcaagaaacttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33729946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 6127867 - 6127943
Alignment:
| Q |
39 |
aatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattt |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
6127867 |
aatactgaggaaacaagcacaatgaatcaaacatgcaccatatgtcaggtgaggtcaactacatgtttcattcattt |
6127943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 6121040 - 6121114
Alignment:
| Q |
251 |
atatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggagatagctctg |
325 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6121040 |
atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctg |
6121114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 6140369 - 6140440
Alignment:
| Q |
43 |
ttgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcatt |
114 |
Q |
| |
|
||||||||||||| || ||||||||| || |||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
6140369 |
ttgaggaaacaagtactcagaatcaaacatgtaccatatgccaggtgaggccaactacatgtttcattcatt |
6140440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 9886570 - 9886623
Alignment:
| Q |
256 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctg |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |||||| |||| |
|
|
| T |
9886570 |
tcatcttgactgcatcaaacaatggttggagttgaagaatgtctgtccaatctg |
9886623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 6132674 - 6132784
Alignment:
| Q |
130 |
acatattaaaatcctaatacatgcgcatattcaaatctcataacccatattattttatgtttattaggaagattatattgatggggagcgtattggaaga |
229 |
Q |
| |
|
||||||||||||| ||||| ||| |||| ||||| |||||||| | | | |||| ||||||||||||||| || | | |||||| | ||||||||| |
|
|
| T |
6132674 |
acatattaaaatcgtaatatatgagcatgttcaagtctcataatctacccttttttttgtttattaggaagaccatgtgaagggggagagaattggaaga |
6132773 |
T |
|
| Q |
230 |
cttgattgtat |
240 |
Q |
| |
|
||||||||||| |
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|
| T |
6132774 |
cttgattgtat |
6132784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 9884863 - 9884815
Alignment:
| Q |
256 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtcca |
304 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| | |||||| |
|
|
| T |
9884863 |
tcatcttgactgcatcaaacaatggttggagttgaagaatttatgtcca |
9884815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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