View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_40 (Length: 408)
Name: NF18974_low_40
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 46355700 - 46356088
Alignment:
| Q |
16 |
atccttcgaagaacaaactggtaaactgatttctaatgaaactaattttaaaggtttctagtcttcaaatccttgtccannnnnnnngtttcttttgcgg |
115 |
Q |
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| T |
46355700 |
atcctttgaagaacaaactggtaaactgatttctaatgaaactaattttaaaggtttctagtcttcaaatccttgtccgttttttttgtttcttttgcgg |
46355799 |
T |
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| Q |
116 |
catcgtnnnnnnnttgcatggatccaatgtgtagaacgagggaatcacacacattatttacaccaaatatacaaggtattggtttactggtccataaact |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46355800 |
catcgtaaaaaaattgcatggatccaatgtgtagaacgagggaatcacacacattatttacaccaaatatacaaggtattggtttactggtccataaact |
46355899 |
T |
|
| Q |
216 |
tgaagaataattcaggtgtgcatattaacgaaattggctttcaggacttctatttgcattgcaatgttacaagagtttaaatagagcacacacttgtgac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46355900 |
tgaagaataattcaggtgtgcatattaacgaaattggctttcaggacttctatttgcattgcaatgttacaagagtttaaatagagcacacactcgtgac |
46355999 |
T |
|
| Q |
316 |
tgcaacaacctttccatgcatcaatatcctttatctctactcgtcacgaagatgaatatgaacaactcctctaggtgatgatgtccatc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46356000 |
tgcaacaacctttccatgcatcaatatcctttatctctactcgtcacgaagatgaatatgaacaactcctctaggtgatgatgcccatc |
46356088 |
T |
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