View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_41 (Length: 405)
Name: NF18974_low_41
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 9197993 - 9198373
Alignment:
| Q |
9 |
atcaaaggtgtacaagccaaagaaggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtaaccatcttgattgcatctt |
108 |
Q |
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| T |
9197993 |
atcaaaagtgtacaagccaaagatggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtgaccatcttgattgcatctt |
9198092 |
T |
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| Q |
109 |
gaataaccttcaccgtatacgaaaagggcttgttcgtaatttcacctgctttacaaacagcatttgttaaaataattccattcccaaaatacccttttgg |
208 |
Q |
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| T |
9198093 |
gaataaccttcaccgtatacgaaaagggcttgttcgtaatttcacctgctttacacacagcatttgttaaaataattccattcccaaaatacccttttgg |
9198192 |
T |
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| Q |
209 |
aagttttggttcaaatttagcccttccatcaacagcaaaaagaagctttgtttcttgttctggcaacattttcagtgcttttgttcttgctatccaaaca |
308 |
Q |
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| T |
9198193 |
aagtttaggttcaaatttagcccttccatcaacagcaaaaagaagctttgtttcttgttctggcaacattttcagtgcttttgttcttgctatccaaaca |
9198292 |
T |
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| Q |
309 |
aacgccgaaagcacttcaaatgttgtacaagattcaagaacaccaccttcatcatctaaagcttttttcttcagttctttt |
389 |
Q |
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| T |
9198293 |
aacgctgaaagcacttcaaatgttgtgcaagattcaagaacaccaccttcatcttctaaagcttttttcttcaattctttt |
9198373 |
T |
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Back To:
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 45350439 - 45350506
Alignment:
| Q |
27 |
aaagaaggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtaaccat |
94 |
Q |
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| T |
45350439 |
aaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccat |
45350506 |
T |
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