View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_42 (Length: 402)
Name: NF18974_low_42
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 10111443 - 10111057
Alignment:
| Q |
1 |
ttcacatcacttttctagtcacttcccccctacgctcatgcaataccttgcaagtagtcattactagtttgatcacatatgaatagcccaaaccaaacc- |
99 |
Q |
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| T |
10111443 |
ttcacatcacttttcctgtcacttcccccctacactcatgcaatatcttgcaagtagtcattactagtttgatgatatacgaatagcccaaaccaaacca |
10111344 |
T |
|
| Q |
100 |
----tcctggtgaaccctcaaaggttcccatctcaagggtctttccgtgaaaaagtacaaaaagtcttcgcatctgtttggatatgcgctggcgatccat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
10111343 |
aacctcctggtgaaccctcaaaggttcccatctcaagggtctttccgtgaaaaagtacaaaaagtctacgcatctgtttggatatgcgttggcgatccat |
10111244 |
T |
|
| Q |
196 |
gttcttcttgaaatgatggcaacaaatcgcattactacagaagcttcctttattagcttcttgaaatcacagtcgtttcgcaaactcacgttaggtgaac |
295 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
10111243 |
gttcttcttgaaatcatggcaacaaatcgcattactacagaagcttcctttattagcttcttgaaatcacgatcgttccgcaaactcacgttaggtgaac |
10111144 |
T |
|
| Q |
296 |
accaaacacagatccaaacagacgcttcacccacattgggttccaagtctagacctccaaaaatcacgttttggttagtcaaatgtg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10111143 |
accaaacacagatccaaacagacgcttcacccacattgggttccaagtctagacctccaaaaatcacgttttggttagtcaaatgtg |
10111057 |
T |
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