View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_45 (Length: 399)

Name: NF18974_low_45
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_45
NF18974_low_45
[»] chr1 (4 HSPs)
chr1 (8-304)||(28029192-28029487)
chr1 (136-197)||(6430687-6430748)
chr1 (160-201)||(36826682-36826723)
chr1 (355-383)||(28029497-28029525)
[»] chr6 (5 HSPs)
chr6 (160-213)||(5964181-5964234)
chr6 (263-304)||(4433094-4433135)
chr6 (160-212)||(7747070-7747122)
chr6 (263-305)||(7379648-7379690)
chr6 (173-209)||(7379739-7379775)
[»] chr8 (2 HSPs)
chr8 (163-211)||(2578083-2578131)
chr8 (256-305)||(30035531-30035580)
[»] chr4 (8 HSPs)
chr4 (160-209)||(24188204-24188253)
chr4 (275-314)||(3469219-3469258)
chr4 (278-317)||(9844359-9844398)
chr4 (136-210)||(19454177-19454251)
chr4 (275-309)||(30015305-30015339)
chr4 (148-201)||(5912779-5912832)
chr4 (160-197)||(7295702-7295739)
chr4 (265-305)||(6961293-6961333)
[»] chr5 (1 HSPs)
chr5 (160-198)||(32117874-32117912)
[»] chr2 (2 HSPs)
chr2 (275-305)||(10953500-10953530)
chr2 (275-305)||(26521189-26521219)
[»] chr7 (2 HSPs)
chr7 (265-323)||(20553889-20553949)
chr7 (171-211)||(20553804-20553844)
[»] chr3 (1 HSPs)
chr3 (263-316)||(20505153-20505206)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 28029192 - 28029487
Alignment:
Q  8 tgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactgcaggtttatgaacataagcattataaccattgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  28029192 tgagatgaataactagtacaccaggcggtgactgtaggcgcaacttgttcccggagcatcaaaactgcaggtttatgaatataagcattgtaaccatggt 28029291  T
Q  108 tattaaaacgagattcaaataacagaaaacctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatt 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28029292 tattaaaacgagattcaaataacagaaaacctattcaccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatt 28029391  T
Q  208 ttaagtnnnnnnntatagatgtgccagaaaaatttgagcggataaatcatattacatgaaccttaatataattcaagattcaagtcataaatcaaat 304  Q
    ||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28029392 ttaagt-aaaaaatataaatgtgccagaaaaatttgagcggataaatcatattacatgaaccttaatataattcaagattcaagtcataaatcaaat 28029487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 6430748 - 6430687
Alignment:
Q  136 acctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaa 197  Q
    ||||||| |||||||  |||| |||||||||| ||||||  |||||||||||| ||||||||    
T  6430748 acctattttccaaatgatgaatcaaatcttattatgaatcataagatacattagcaataaaa 6430687  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 36826723 - 36826682
Alignment:
Q  160 aatcttatcatgaattgtaagatacattaccaataaaaatat 201  Q
    |||||||| ||||||| ||||||||||||| |||||||||||    
T  36826723 aatcttattatgaattataagatacattactaataaaaatat 36826682  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 28029497 - 28029525
Alignment:
Q  355 aatcacatgtatcataagatactgataac 383  Q
    |||||||||||||||||||||||||||||    
T  28029497 aatcacatgtatcataagatactgataac 28029525  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 5964181 - 5964234
Alignment:
Q  160 aatcttatcatgaattgtaagatacattaccaataaaaatataacattttaagt 213  Q
    |||||||| || ||||||||||||||||| |||||||||||| |||||||||||    
T  5964181 aatcttattattaattgtaagatacattagcaataaaaatatgacattttaagt 5964234  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 4433094 - 4433135
Alignment:
Q  263 atgaaccttaatataattcaagattcaagtcataaatcaaat 304  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  4433094 atgaacctcaaaataattcaagattcaagtcataaatcaaat 4433135  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 7747070 - 7747122
Alignment:
Q  160 aatcttatcatgaattgtaagatacattaccaataaaaatataacattttaag 212  Q
    |||||||  |||||| ||||||||||||| |||||||||||| ||||||||||    
T  7747070 aatcttactatgaatcgtaagatacattatcaataaaaatatgacattttaag 7747122  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 7379690 - 7379648
Alignment:
Q  263 atgaaccttaatataattcaagattcaagtcataaatcaaatg 305  Q
    ||||||||  ||||||||| |||||||||||||||||||||||    
T  7379690 atgaacctctatataattctagattcaagtcataaatcaaatg 7379648  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 7379775 - 7379739
Alignment:
Q  173 attgtaagatacattaccaataaaaatataacatttt 209  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7379775 attgtaagatacattaccaataaaattatgacatttt 7379739  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 2578131 - 2578083
Alignment:
Q  163 cttatcatgaattgtaagatacattaccaataaaaatataacattttaa 211  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  2578131 cttattatgaatagtaagatacattaccaataaaaatatgacattttaa 2578083  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 30035580 - 30035531
Alignment:
Q  256 atattacatgaaccttaatataattcaagattcaagtcataaatcaaatg 305  Q
    |||||| || |||||||| |||||| ||||||||||||||| ||||||||    
T  30035580 atattatattaaccttaaaataattaaagattcaagtcatatatcaaatg 30035531  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 24188253 - 24188204
Alignment:
Q  160 aatcttatcatgaattgtaagatacattaccaataaaaatataacatttt 209  Q
    |||||||| |||||  |||||||||||||||||||||| |||||||||||    
T  24188253 aatcttattatgaaccgtaagatacattaccaataaaattataacatttt 24188204  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 3469258 - 3469219
Alignment:
Q  275 ataattcaagattcaagtcataaatcaaatggcaagaaaa 314  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  3469258 ataattcaagattcaagtaataaatcaaatgacaagaaaa 3469219  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 9844359 - 9844398
Alignment:
Q  278 attcaagattcaagtcataaatcaaatggcaagaaaagtg 317  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  9844359 attcaagattcaagtcataaataaaatgacaagaaaagtg 9844398  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 19454251 - 19454177
Alignment:
Q  136 acctattctccaaatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatataacatttta 210  Q
    ||||||| ||| |||||||||   |||||||  ||||||||||||||||||| ||| |||||||||  |||||||    
T  19454251 acctattttccgaatcgtgaattgaatcttactatgaattgtaagatacattgccattaaaaatatgtcatttta 19454177  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 30015305 - 30015339
Alignment:
Q  275 ataattcaagattcaagtcataaatcaaatggcaa 309  Q
    |||||||||||||||||||||||| ||||||||||    
T  30015305 ataattcaagattcaagtcataaaccaaatggcaa 30015339  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 5912832 - 5912779
Alignment:
Q  148 aatcgtgaaacaaatcttatcatgaattgtaagatacattaccaataaaaatat 201  Q
    ||||||||| | || |||| ||| |||||||||||||||| |||||||||||||    
T  5912832 aatcgtgaatcgaaacttagcatcaattgtaagatacattgccaataaaaatat 5912779  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 7295739 - 7295702
Alignment:
Q  160 aatcttatcatgaattgtaagatacattaccaataaaa 197  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  7295739 aatcttattatgaattgtaagatacattactaataaaa 7295702  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 6961333 - 6961293
Alignment:
Q  265 gaaccttaatataattcaagattcaagtcataaatcaaatg 305  Q
    ||||||||||||| || ||||||||||||||| ||||||||    
T  6961333 gaaccttaatatagtttaagattcaagtcatagatcaaatg 6961293  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 32117912 - 32117874
Alignment:
Q  160 aatcttatcatgaattgtaagatacattaccaataaaaa 198  Q
    |||||||| || |||||||||||||||||||||||||||    
T  32117912 aatcttattatcaattgtaagatacattaccaataaaaa 32117874  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 10953500 - 10953530
Alignment:
Q  275 ataattcaagattcaagtcataaatcaaatg 305  Q
    |||||||||||||||||||||||||||||||    
T  10953500 ataattcaagattcaagtcataaatcaaatg 10953530  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 26521219 - 26521189
Alignment:
Q  275 ataattcaagattcaagtcataaatcaaatg 305  Q
    |||||||||||||||||||||||||||||||    
T  26521219 ataattcaagattcaagtcataaatcaaatg 26521189  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 20553889 - 20553949
Alignment:
Q  265 gaaccttaatataattcaagattcaagtcataaatcaaatggc--aagaaaagtggctgac 323  Q
    ||||||||| |||||| |||||| ||||||||||||||||| |  |||||||||| |||||    
T  20553889 gaaccttaaaataattgaagatttaagtcataaatcaaatgacaaaagaaaagtgtctgac 20553949  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 20553804 - 20553844
Alignment:
Q  171 gaattgtaagatacattaccaataaaaatataacattttaa 211  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  20553804 gaatcgtaagatacattaccgataaaaatatgacattttaa 20553844  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 20505206 - 20505153
Alignment:
Q  263 atgaaccttaatataattcaagattcaagtcataaatcaaatggcaagaaaagt 316  Q
    |||||||| |||||||||||||||| |||| ||| |||||||| || |||||||    
T  20505206 atgaacctcaatataattcaagattaaagttatatatcaaatgacatgaaaagt 20505153  T

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