View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_46 (Length: 396)
Name: NF18974_low_46
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 9652694 - 9652330
Alignment:
| Q |
20 |
aactccatggtaacatgcttgaaaactgaacaacaaatgacatgtatcaagcaccgtctgatgacagggtgctctcaaatgtttgaaggcataaggacat |
119 |
Q |
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| T |
9652694 |
aactccgtggtaacatgcttgaaaactgaacaacaaatgacatgtatcaagcaccgtctgatgacagggtgctctcaaatgtttgaaggcataaggacat |
9652595 |
T |
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| Q |
120 |
tgaatccatctgctgcagtagatactatcattccaggaatctttgggtgccagtgcaattctgtagggtatttttgtccctgtttcaagttaaaagaaat |
219 |
Q |
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| T |
9652594 |
tgaatccatctgctgcagtagatactatcattccaggaatctttgggtgccagtgcaattctttagggtatttttgtccctgtttcaagttaaaagaaat |
9652495 |
T |
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| Q |
220 |
aagaggataagccgaaaacaatttatagacacggcaaactattttcaaaacttctttcaatttcaaaaacttacactagcgtttatgtcataagataagt |
319 |
Q |
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| T |
9652494 |
aagaggataagccgaaaacaatttatagacacggcaaactattttcaaaacttctttcaatttcaaaaacttacactagtgtttatgtcataagataagt |
9652395 |
T |
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| Q |
320 |
tcaaattacctggtgaataaataatagttggggaggcagatcttcaggagcccttatttgtcctt |
384 |
Q |
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| T |
9652394 |
tcaaattacctggtgaataaataatagttggggaggcagatcttcaggagcccttacttgtcctt |
9652330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 34734499 - 34734687
Alignment:
| Q |
35 |
tgcttgaaaactgaacaacaaatgacatgtatcaagcaccgtctgatgacagggtgctctcaaatgtttgaaggcataaggacattgaatccatctgctg |
134 |
Q |
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| T |
34734499 |
tgcttgaaaactgaacagcaa-tgccgtgtatcatgcagcttctgatggcaaggtgctctgaa-tatttgaaggcatgaggacgttgaatccatctgctg |
34734596 |
T |
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| Q |
135 |
cagtagatactatcattccaggaatctttgggtgccagtgcaattctgtagggtatttttgtccctgtttcaagttaaaagaaataagagg |
225 |
Q |
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| T |
34734597 |
cagtacatactatcattccaggaatctgtgtgtgccaatgcagttctttggggtctttttgtccctgttgcaagttcaaggaaataagagg |
34734687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 34734983 - 34735034
Alignment:
| Q |
319 |
ttcaaattacctggtgaataaataatagttggggaggcagatcttcaggagc |
370 |
Q |
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| T |
34734983 |
ttcaaattacctggtgaataaacaatagttggggaggcagatcttcaggagc |
34735034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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