View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_47 (Length: 395)
Name: NF18974_low_47
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Complemental strand, 19929892 - 19929519
Alignment:
| Q |
7 |
ggagcacagactaatatcacactctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19929892 |
ggagcacaaactaatatcacactctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctt |
19929793 |
T |
|
| Q |
107 |
tcccacaagtccacaacaagactaccaaaaaatgacagacatcgatataacccaagtaaaaaagaaccatcaataagaaaataaatgaaaaagttgagag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19929792 |
tcccacaagtccacaacaagactaccaaaaaatgacagacatcgatataacccaagtaaaaaagaaccatcaataagaaaataaatgaaaaagttgagag |
19929693 |
T |
|
| Q |
207 |
gatctagtatcaattaattacgtgaaagtcaatacatatttgaaaatttaaatgttaaagaggtcaaaatgaaacagaggtcatgcctttgaaagcatca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19929692 |
gatctagtatcaattaattacgtgaaagtcaatacatatttgaaaatttaaatgttatagaggtcaaaatgaaacagaggtcatgcctttgaaagcatca |
19929593 |
T |
|
| Q |
307 |
gatcttaccattgcatacgaagaatctaatttaaaaagtagacataagaactattgtaaactatgacataactt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19929592 |
gatcttaccattgcatacgaagaatctaatttaaaaagtagacataagaactattgtaaactatgacataactt |
19929519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 352
Target Start/End: Complemental strand, 19936145 - 19935825
Alignment:
| Q |
29 |
tctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagac |
128 |
Q |
| |
|
||||||||||| |||||||| |||| | |||||| |||| |||| ||| ||||| ||| ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
19936145 |
tctgttttcaattaaaagcacgttggcattctactacaccagtctatgtagttggaaaatttgacatccattacttcttcccacaagtccacaacaagac |
19936046 |
T |
|
| Q |
129 |
taccaaaaaatgacagacatcgatataacccaagtaaaaaag-aaccatcaataagaaaataaatgaaaaagttgagaggatctagtatcaattaattac |
227 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
19936045 |
taccaaataattacagacattgatataacccaagtaaaaaaacaatcatcagtaagaaaa-----gaaaaagttgagaggatctagcatcaattagttac |
19935951 |
T |
|
| Q |
228 |
gtgaaagtcaatacatatttgaaaatttaaatgtta-aagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacga |
326 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||| | |
|
|
| T |
19935950 |
gtgaaagtcaatacatatttgaaaattgaaatgacataagaggtcaaattgaaacagaggccatgcctttgaaaccatcagatgttaccattgaatacaa |
19935851 |
T |
|
| Q |
327 |
agaatctaatttaaaaagtagacata |
352 |
Q |
| |
|
||| |||||| ||||||||||||||| |
|
|
| T |
19935850 |
agattctaatataaaaagtagacata |
19935825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 352
Target Start/End: Complemental strand, 19967284 - 19966964
Alignment:
| Q |
29 |
tctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagac |
128 |
Q |
| |
|
||||||||||| |||||||| |||| | |||||| |||| |||| ||| ||||| ||| ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
19967284 |
tctgttttcaattaaaagcacgttggcattctactacaccagtctatgtagttggaaaatttgacatccattacttcttcccacaagtccacaacaagac |
19967185 |
T |
|
| Q |
129 |
taccaaaaaatgacagacatcgatataacccaagtaaaaaag-aaccatcaataagaaaataaatgaaaaagttgagaggatctagtatcaattaattac |
227 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
19967184 |
taccaaataattacagacattgatataacccaagtaaaaaaacaatcatcagtaagaaaa-----gaaaaagttgagaggatctagcatcaattagttac |
19967090 |
T |
|
| Q |
228 |
gtgaaagtcaatacatatttgaaaatttaaatgtta-aagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacga |
326 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||| | |
|
|
| T |
19967089 |
gtgaaagtcaatacatatttgaaaattgaaatgacataagaggtcaaattgaaacagaggccatgcctttgaaaccatcagatgttaccattgaatacaa |
19966990 |
T |
|
| Q |
327 |
agaatctaatttaaaaagtagacata |
352 |
Q |
| |
|
||| |||||| ||||||||||||||| |
|
|
| T |
19966989 |
agattctaatataaaaagtagacata |
19966964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 362
Target Start/End: Original strand, 47604958 - 47605292
Alignment:
| Q |
29 |
tctgttttcaaataaaagcaggttgtcgttctacaacactagtcaatgcagttgcaaattttgatatccattactctttcccacaagtccacaacaagac |
128 |
Q |
| |
|
||||||||||| |||||||| | || ||||||| | ||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||| |
|
|
| T |
47604958 |
tctgttttcaattaaaagcatgctggagttctactattttagtctatgtagttgcaaattttgatatccattactccttcccacaagtctacaacaggac |
47605057 |
T |
|
| Q |
129 |
tacc-aaaaaatgacagacatcgatataacccaagtaaaaaagaaccatcaataagaaaataaatgaaaaagttgagaggatctagtatcaattaattac |
227 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||| | | || ||||||| | |
|
|
| T |
47605058 |
taccaaaaaaatgacagacatggatataatccaagtaaaaaa-aatcatcaataagaaaggaaatgaaaaagttgagagggttctgcatgaattaataaa |
47605156 |
T |
|
| Q |
228 |
gtgaaagtcaatacatatttgaaaatttaaatgttaaagaggtcaaaatgaaacagaggtcatgcctttgaaagcatcagatcttaccattgcatacgaa |
327 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||| | ||||||||||| |||| ||||| |||||||||||| | || |||||| |||||||| ||| |
|
|
| T |
47605157 |
gtgaaagtcaatgtatagttgaaaatctaaatgacatagaggtcaaaacgaaagagaggctatgcctttgaaactaaaag-tcttacaattgcatatgaa |
47605255 |
T |
|
| Q |
328 |
gaatctaatttaaaaagtagac--ataagaactattg |
362 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
47605256 |
gaatctaatagaaaaagtagacatataagaactattg |
47605292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 359
Target Start/End: Original strand, 19973427 - 19973556
Alignment:
| Q |
229 |
tgaaagtcaatacatatttgaaaatttaaatgttaaagaggtcaaaatgaaacagaggtcatgcctttg-aaagcatcagatcttaccattgcatacg-a |
326 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| | ||| |||||||||||||||| ||||||||||| ||| ||| | |||||| ||||||||| | |
|
|
| T |
19973427 |
tgaaagccaatacatatttgaaaatctaaatg--acaga-gtcaaaatgaaacagatctcatgcctttgaaaaccattaaatcttagcattgcatatgtt |
19973523 |
T |
|
| Q |
327 |
agaatctaatttaaaaagtagacataagaacta |
359 |
Q |
| |
|
|||||||||| |||||| | |||||||||||| |
|
|
| T |
19973524 |
agaatctaatacaaaaagcacacataagaacta |
19973556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University