View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_48 (Length: 392)
Name: NF18974_low_48
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 18867217 - 18867589
Alignment:
| Q |
1 |
aacgccaatctttgtctgaccatgatcatcatactggacatggatcgaaaaatgtgttccttggtaagcaagaaattgaaaatggaactttgaaagatta |
100 |
Q |
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| T |
18867217 |
aacgccaatttttgtctgaccatgatcttaatactggacatggatcgaaaaacgtgttccttggtaagcaagaaattgaaaatggaactttgaaagatta |
18867316 |
T |
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| Q |
101 |
tgtaaagggctttaagcgacctagattagtgttggatggttgtaaattgagatataaagaagctttgcaattgatagagagtcatactcaagcacttttt |
200 |
Q |
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| T |
18867317 |
tgtaaagggctttaagcgacctagattagtgttggatggttgtaaattgagatataaagaagctttgcaactgatagagagtcatactcaagcccttttt |
18867416 |
T |
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| Q |
201 |
gagcataataaggaatgtggtttgaatgagtt---tgatgatgatgaagaagatgataggtttattgaagcttcattttctagtataaagagactactat |
297 |
Q |
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| T |
18867417 |
gagcataataaggaatgtggtttgaatgagtttgatgatgatgatgaagaagatgataggtttattgaagcttcattttctagtataaagagactactat |
18867516 |
T |
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| Q |
298 |
gggaaggtcttgcttttggatcttttctgtggatgacagaagatttcattgatggaatatataagcttgaaga |
370 |
Q |
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| T |
18867517 |
gggaaggtcttgcttttggatcttttctgtggatggcagaagatttcattgatggaatatataagcttgaaga |
18867589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 18888238 - 18888335
Alignment:
| Q |
249 |
gatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgtggatgacagaagatttcat |
346 |
Q |
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| T |
18888238 |
gatgataagtttattgaagcttcatttactattataaagagactactctaagaaggtcttgcttttggaactttcccatggatggccgaagatttcat |
18888335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 18881333 - 18881383
Alignment:
| Q |
64 |
gtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggcttta |
114 |
Q |
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| T |
18881333 |
gtaagcaagaaaatgaaattggagatttgaaagattatataaagggcttta |
18881383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 18887979 - 18888029
Alignment:
| Q |
64 |
gtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggcttta |
114 |
Q |
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| T |
18887979 |
gtaagcaagaaaatgaaattggagatttgaaagattatataaagggcttta |
18888029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 3544930 - 3545011
Alignment:
| Q |
268 |
cttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgtggatgacagaagatttcattga |
349 |
Q |
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| T |
3544930 |
cttcattttctagtcttaagagactagtcttggaagctgttgcttttggatcttttctgtgggaaacagaagattacattga |
3545011 |
T |
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