View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_55 (Length: 370)
Name: NF18974_low_55
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 40984726 - 40984380
Alignment:
| Q |
15 |
cacattcatatagaatcatcaacctcaaccataatttagatgaaatttacatgcagtctatcccctagaaacctttgaacttaaattgcggttatacgta |
114 |
Q |
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| T |
40984726 |
cacattcatatagaatcatcaacctcaatcataatttagatgaaatttacatgcagtctatccc-tagaaacctttgaacttaaattgcagttatacgta |
40984628 |
T |
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| Q |
115 |
gtgcgggtagaagattcaattgtctatgttaaccccaagattactacccaaactaacgtagattttaggttgaatattttgtttgtnnnnnnnnnnnnnn |
214 |
Q |
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| T |
40984627 |
gtgtgggtagaagatttaattgtctatgtcaaccctaagattactatccaaactaacgtagatcttagtttgaatattttgtttgtaaaaaaagaaaaaa |
40984528 |
T |
|
| Q |
215 |
nnctaacaactgataggagaagttagtaaaagtcacacattagattgaaaagtgaatgttcaacgatatataagtctaaa---aaacctcacaaacctaa |
311 |
Q |
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||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||| | || |||||||| |
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| T |
40984527 |
aactaacaactgataggagaatttagtaaaagtctcacattaaattgaaaagtgaatgttcaacgatatataagtgtaaaattaaaacccataaacctaa |
40984428 |
T |
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| Q |
312 |
cattttgaataaatatgtagtgtccaactcacttgtatgactgttctt |
359 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40984427 |
cattttaaataaatatgtagtgtccaactcacttgtatgactgttctt |
40984380 |
T |
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