View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_56 (Length: 367)
Name: NF18974_low_56
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 63 - 354
Target Start/End: Original strand, 8070922 - 8071210
Alignment:
| Q |
63 |
gatcaaaactaatatnnnnnnngagcaagtaagcaaaaccctcataaagtaacctccacaacatacaaaaggtaggaaatcaccactacatcataactta |
162 |
Q |
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| T |
8070922 |
gatcaaaactaatataaaaaaagagcaagtaagcaaaaccctcataaagtaacctccacaacatacaaaaggtaggaaatcaccactacatcataaccta |
8071021 |
T |
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| Q |
163 |
caaacacccaccctgaactaaataacataacaatgacttgacaaagtatgttttccaacaccatctcaatgagaacatagatgagccaaaatataccata |
262 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8071022 |
caaacacccaccctgaactacataacataacaatgacttgacaaagtatgttttctaacaccatctcaataagaacatagatgagccaaaatataccata |
8071121 |
T |
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| Q |
263 |
tgttatagtgccacaagaagcagcacactaaaaatcaccagagcactatcacacaacgccatcataaaacctcttaattaataatgcccttc |
354 |
Q |
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| T |
8071122 |
tgttatagtgccac---aagcagcccactaaaaatcaccagagcactatcacacaacgccatcataaaacctcttaattaacaatgcccttc |
8071210 |
T |
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Back To:
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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 13878024 - 13877927
Alignment:
| Q |
156 |
taacttacaaacacccaccctgaactaaataacataacaatgacttgacaaagtatgttttccaacaccatctcaatgagaacatagatgagccaaaata |
255 |
Q |
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|||| ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
13878024 |
taacctacaaacacccaccctgaactaa----cataaaaacaacttggcaaagtatgttttccaacaccatctcaatgagaacacaaatgagccaaaata |
13877929 |
T |
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