View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_58 (Length: 360)
Name: NF18974_low_58
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 51756383 - 51756647
Alignment:
| Q |
1 |
tcctcattcatgctctttgggactcaaatttgtaacgcaaagtgttgatatagagcaaccaattaattctccgtatattttttctgtatctctttttgtc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51756383 |
tcctcattcatgctctttggctctcaaatttgtaacgcaaagtgttgatatagagcaaccaattaattctccgtacattttttctgtatctctttttgtc |
51756482 |
T |
|
| Q |
101 |
aatcatgtatataaaattaatattccatattcaagtatcagaaaataaattaagtgtcaaagttggtaatgaattgaagagtgaaatgaaattgtgttgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756483 |
aatcatgtatataaaattaatattccatattcaagtatcagaaaataaattaagtgtcaaagttggtaatgaattgaagagtgaaatgaaattgtgttgt |
51756582 |
T |
|
| Q |
201 |
gctat----gtagtagataaaccactgataatctcaaatgtccaggagatatagatgtgttcatt |
261 |
Q |
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||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
51756583 |
gctatgtacgtaatagataaaccactgaatatctcaaatgttcaggagatatagatgtgttcatt |
51756647 |
T |
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