View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_61 (Length: 355)
Name: NF18974_low_61
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 337
Target Start/End: Complemental strand, 11906651 - 11906392
Alignment:
| Q |
80 |
tgttatctaatgttacacagttaaatgtatgatgcaattaagctcaaattttgggaataatatatatgaataatggtgatagtgatacttatgatccttt |
179 |
Q |
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| T |
11906651 |
tgttacctaatgttacacagttaaatctatgatgcaattaagctcaaattttgggaataatatatatgaataatggtgatagtgatacttatgatccttt |
11906552 |
T |
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| Q |
180 |
attcttcttacatgcttagatgtgtatagctcaagcatcaaatttaaaaaattaatttacttgattaatgtaggaagttcagctgtaaaaaataaatgag |
279 |
Q |
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| T |
11906551 |
attcttcttacatgcttagatgtgtatagctcaagcatcaaatttaaaaaattaatttacttgattaatgtaggaagttcagctgtaaaaaataaatgag |
11906452 |
T |
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| Q |
280 |
attcttggagaaacctattaaaagattgggtacata--ttgaagccctgagggctgaggt |
337 |
Q |
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| T |
11906451 |
attcttggagatacctattaaaagattgggtacatattttgaagccctgagggctgaggt |
11906392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 11906721 - 11906681
Alignment:
| Q |
10 |
ataattctaggattaaaatacaccattttcaacttttattg |
50 |
Q |
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| T |
11906721 |
ataattctaggattaaaatacaccattttcaacttttattg |
11906681 |
T |
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