View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_62 (Length: 353)
Name: NF18974_low_62
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 24566459 - 24566246
Alignment:
| Q |
18 |
caattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaa |
117 |
Q |
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| T |
24566459 |
caattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaa |
24566360 |
T |
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| Q |
118 |
agataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtagaagactata |
217 |
Q |
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| T |
24566359 |
agataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtagaagactata |
24566260 |
T |
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| Q |
218 |
ctgatcattgggtt |
231 |
Q |
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|||||||||||||| |
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| T |
24566259 |
ctgatcattgggtt |
24566246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 24565336 - 24565262
Alignment:
| Q |
244 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
318 |
Q |
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| T |
24565336 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
24565262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 45532545 - 45532795
Alignment:
| Q |
54 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
153 |
Q |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
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| Q |
154 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggttataatatgaccacttataat |
251 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatcacgaatgtagaa----atactcatcattgggttataatatgaccaattataat |
45532740 |
T |
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| Q |
252 |
tcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagattt |
309 |
Q |
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| T |
45532741 |
tcaaaat---aaaaaatttgaagtttttattcttaaagatattacattttaaagattt |
45532795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 318
Target Start/End: Complemental strand, 44339660 - 44339384
Alignment:
| Q |
52 |
gtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatg |
151 |
Q |
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| T |
44339660 |
gtcttctacatgatatgtgaatcagatggatatttgcaaaaactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtg |
44339561 |
T |
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| Q |
152 |
attaaatgtttctttcatgcaatag----tctttcttatcaagc--atgtatcacgagtgtag-------aagactatactgatcattgggttataatat |
238 |
Q |
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| T |
44339560 |
attaaatgcttctttcatgcaatagagacactttgatatcaaacatatatatcacgagtttagaagactcaagactacactcatcattgagttataatat |
44339461 |
T |
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| Q |
239 |
gaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
318 |
Q |
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| T |
44339460 |
gaccaattataattcaaagtataaa---attagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44339384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 44335273 - 44335431
Alignment:
| Q |
18 |
caattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaa |
117 |
Q |
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||||||| ||||| |||||||||||| || ||||| ||||| ||||||| || |||| |||||||||||| || || ||||||||||| |||| |
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| T |
44335273 |
caattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaaaactacttacagtttgagaataagaa |
44335372 |
T |
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| Q |
118 |
agataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
176 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
44335373 |
agataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 44335504 - 44335590
Alignment:
| Q |
229 |
gttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
318 |
Q |
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| T |
44335504 |
gttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44335590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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