View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_68 (Length: 337)
Name: NF18974_low_68
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 24377963 - 24378265
Alignment:
| Q |
17 |
acactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
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| T |
24377963 |
acactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtg |
24378062 |
T |
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| Q |
117 |
tcacaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgt |
216 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24378063 |
tcgcaaatccaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgc |
24378162 |
T |
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| Q |
217 |
gtggtagcagcggtggtgctagcggtgttgttacggtggtgccggagaagtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttcc |
316 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||| ||||||||| |
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| T |
24378163 |
gtggtggcagcggtggtgctagcggtgttgttacagtggtgccggagaagtttccggcgtagagagaagaaggaaaagattttcgattgtcgttgcttcc |
24378262 |
T |
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| Q |
317 |
att |
319 |
Q |
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||| |
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| T |
24378263 |
att |
24378265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 20102875 - 20102651
Alignment:
| Q |
11 |
cacagaacactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20102875 |
cacaaaacactttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaa |
20102776 |
T |
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| Q |
111 |
cgaatgtcacaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaa |
210 |
Q |
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| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20102775 |
agggtgtcgcaaatacaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaa |
20102676 |
T |
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| Q |
211 |
atctgtgtggtagcagcggtggtgc |
235 |
Q |
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||||| | ||||||||||||||||| |
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| T |
20102675 |
atctgcgaggtagcagcggtggtgc |
20102651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 20102659 - 20102590
Alignment:
| Q |
250 |
cggtggtgccggagaagtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccatt |
319 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20102659 |
cggtggtgccggagaagtttccggcgtagagagaagaaggaagagatttttgattgatgttgcttccatt |
20102590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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