View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_69 (Length: 336)
Name: NF18974_low_69
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 125 - 320
Target Start/End: Complemental strand, 2926407 - 2926212
Alignment:
| Q |
125 |
aagaacgtaaagtggcaacaatgagagggtttttcccatggcacgtgacaacaacaaccttttcagggaacatgtagaaacaattgtgggctatattttc |
224 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926407 |
aagaacgtaaagtggaaacaatgagagggtttttcccatggcacgtgacaacaacaaccttttcagggaacatgtagaaacaattgtgggctatattttc |
2926308 |
T |
|
| Q |
225 |
cttttcgatgtcatagtcccaaatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcgagcacaaggctattacaagaaagagg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
2926307 |
cttttcgatgtcatagtcccaaatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcaagcacaagactattacaagaaagagg |
2926212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 7047159 - 7047293
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc |
166 |
Q |
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||||| |||||||||||||| || |||||||| ||||||| |||||||| | || | ||| || ||||||||||||||||||||||| ||||||| |
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| T |
7047159 |
atgtcagggatcaccttccatttttcattgccgcatttcgacagtaacggctctgggtgagaggatattgtggcaacaatgagagggttttttccatggc |
7047258 |
T |
|
| Q |
167 |
acgtgacaacaacaaccttttcagggaacatgtag |
201 |
Q |
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| T |
7047259 |
acgtgacagcaatgaccttttcagggaacatgtag |
7047293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 9171155 - 9171288
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatg-aggaagaacgtaaagtggcaacaatgagagggtttttcccatgg |
165 |
Q |
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||||| |||||||||||||||| ||||| ||| ||||| ||||||||||||||| ||||| | ||| || |||||| |||||| ||||| |||||| |
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| T |
9171155 |
atgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacggatatggaggaaaggc-taacatgccaacaacgagaggtttttttccatgg |
9171253 |
T |
|
| Q |
166 |
cacgtgacaacaacaaccttttcagggaacatgta |
200 |
Q |
| |
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||||||||| |||| ||||||| |||| ||||||| |
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| T |
9171254 |
cacgtgacagcaacgacctttttagggtacatgta |
9171288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 7013173 - 7013306
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc |
166 |
Q |
| |
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||||| || ||||||||||| ||||||| ||| ||||| |||||| || | || || ||| ||| ||| ||||||||||||| ||||||||||||| |
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| T |
7013173 |
atgtcaggtatcaccttccatttctcatcaccacatttcacaagtaatggctgtgggggagaggttaacgtgccaacaatgagaggttttttcccatggc |
7013272 |
T |
|
| Q |
167 |
acgtgacaacaacaaccttttcagggaacatgta |
200 |
Q |
| |
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|||| |||||||| ||||||| |||| ||||||| |
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| T |
7013273 |
acgtaacaacaacgacctttttagggtacatgta |
7013306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 7026109 - 7026242
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc |
166 |
Q |
| |
|
||||| || ||||| ||||| ||||||| ||| ||||| ||||||||| | || || ||| ||| ||| ||||||||||||| ||||||||||||| |
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| T |
7026109 |
atgtcaggtatcacattccatttctcatcaccacatttcataagtaacggctgtgggggagaggttaatgtgccaacaatgagaggttttttcccatggc |
7026208 |
T |
|
| Q |
167 |
acgtgacaacaacaaccttttcagggaacatgta |
200 |
Q |
| |
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|||| |||||||| ||||||| |||| ||||||| |
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| T |
7026209 |
acgtaacaacaacgacctttttagggtacatgta |
7026242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 7030166 - 7030288
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc |
166 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || |||||| |||||| || ||||| || ||| ||| | | ||||||||||||| ||||| ||||||| |
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| T |
7030166 |
atgttggggatcaccttccagttctcatctccgaatttcaaaagtaccgaatatgggggagaggctaacgcgccaacaatgagaggcttttttccatggc |
7030265 |
T |
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| Q |
167 |
acgtgacaacaacaaccttttca |
189 |
Q |
| |
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|||| || |||||||||||||| |
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| T |
7030266 |
acgtagcagcaacaaccttttca |
7030288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 7046996 - 7047061
Alignment:
| Q |
4 |
atccccatctctctccactaataatttcttcttcataccaccaaccaaaggttcaaccattaaatg |
69 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| ||| |||||| |
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| T |
7046996 |
atccccatcgctctccactaataatttcttgttctcaccaccatccaaaggttcagccactaaatg |
7047061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 9159273 - 9159140
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatg-aggaagaacgtaaagtggcaacaatgagagggtttttcccatgg |
165 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||| ||||| ||||||||||||| | ||||| | ||| || |||||| |||||| |||| |||||| |
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| T |
9159273 |
atgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacggatacggaggaaaggc-taacatgccaacaacgagaggtgtttttccatgg |
9159175 |
T |
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| Q |
166 |
cacgtgacaacaacaaccttttcagggaacatgta |
200 |
Q |
| |
|
||||||||| |||| ||||||| |||| ||||||| |
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| T |
9159174 |
cacgtgacagcaacgacctttttagggtacatgta |
9159140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 7041992 - 7042048
Alignment:
| Q |
246 |
aatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcgagcacaag |
302 |
Q |
| |
|
||||||| |||| |||||||| ||| |||| |||||||||| |||||||||||||| |
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|
| T |
7041992 |
aatgaaattgttgcttcccaaatggaggacagataatttgttgaaatcgagcacaag |
7042048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 12041980 - 12042113
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc |
166 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||| |||||| || ||||| || ||| ||| | | ||||||||||||| ||||| ||||||| |
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| T |
12041980 |
atgtcggggatcaccttccagttctcatctccgaatttcaaaagtaccgaatatgggggagaggctaacgcgccaacaatgagaggcttttttccatggc |
12042079 |
T |
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| Q |
167 |
acgtgacaacaacaaccttttcagggaacatgta |
200 |
Q |
| |
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|||| || ||| |||||||| |||| ||||||| |
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| T |
12042080 |
acgtagcagcaataacctttttagggtacatgta |
12042113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 9344192 - 9344230
Alignment:
| Q |
67 |
atgtcggggatcaccttccaattctcattgccaaatttc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
9344192 |
atgtcggggatcaccttccaattctcattgctaaatttc |
9344230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 3676237 - 3676285
Alignment:
| Q |
153 |
gtttttcccatggcacgtgacaacaacaaccttttcagggaacatgtag |
201 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| |||| |||||||| |
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|
| T |
3676237 |
gttttttccatggcatgtgacaacaacgacctttttagggtacatgtag |
3676285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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