View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_72 (Length: 333)
Name: NF18974_low_72
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 15441101 - 15441418
Alignment:
| Q |
1 |
agtagtcataaatgactctgatagtgagtcgacagattcagacaatgagactacagattcagatattgagataattgattcagaaaaaggtgaagtcgat |
100 |
Q |
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| T |
15441101 |
agtagtcataaatgactctgatagtgagtcgacagattcagacaatgagactacagattcagatattgagataattgattcagaaaaaggtgaagtcgat |
15441200 |
T |
|
| Q |
101 |
tccagcaaaggatgtgcaactgctgttactattgctgatccacaacctatttctgatccaatctggaggtaataaatttgttcttttcgtgacttctatt |
200 |
Q |
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| T |
15441201 |
tccagcaaaggatgtgcaactgctgttactattgctgatccacaacctatttctgatccaatctggaggtaagaaatttgttctttttgtgacttctatt |
15441300 |
T |
|
| Q |
201 |
acattatttcggaattaatgtaacttttatagctgctcctgtgaaatcattgtctgaagttgaattttgtggataataggggaagtttgctggttctcaa |
300 |
Q |
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| T |
15441301 |
acattatttcggaattaatgtaacttttatagctgctcctgtgaaatcattgtctgaagttgaattttgtggataataggggaagtttgctggttctcaa |
15441400 |
T |
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| Q |
301 |
caaaagctttgacaaaat |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
15441401 |
caaaagctttgacaaaat |
15441418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 11788637 - 11788588
Alignment:
| Q |
138 |
atccacaacctatttctgatccaatctggaggtaataaatttgttctttt |
187 |
Q |
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||||||| |||||| ||| |||||||||||||||| ||||||||| |||| |
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| T |
11788637 |
atccacagcctattgctgctccaatctggaggtaaaaaatttgttttttt |
11788588 |
T |
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