View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_74 (Length: 326)

Name: NF18974_low_74
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_74
NF18974_low_74
[»] chr4 (9 HSPs)
chr4 (1-220)||(1173384-1173607)
chr4 (237-303)||(1175001-1175067)
chr4 (139-187)||(32397404-32397452)
chr4 (139-187)||(32882220-32882268)
chr4 (14-43)||(1167898-1167927)
chr4 (14-43)||(1170383-1170412)
chr4 (141-182)||(38052427-38052468)
chr4 (150-186)||(9012484-9012520)
chr4 (139-187)||(19806961-19807009)
[»] chr1 (4 HSPs)
chr1 (138-187)||(29086588-29086637)
chr1 (141-187)||(31023726-31023772)
chr1 (145-182)||(11030142-11030179)
chr1 (141-178)||(13352559-13352596)
[»] chr2 (3 HSPs)
chr2 (138-185)||(43248522-43248569)
chr2 (141-187)||(10197955-10198001)
chr2 (141-187)||(21134543-21134589)
[»] chr7 (3 HSPs)
chr7 (141-187)||(42521430-42521476)
chr7 (141-182)||(30440532-30440573)
chr7 (141-173)||(24166749-24166781)
[»] chr5 (5 HSPs)
chr5 (141-187)||(8050487-8050533)
chr5 (141-187)||(36302831-36302877)
chr5 (139-187)||(6517544-6517592)
chr5 (138-174)||(9227857-9227893)
chr5 (139-187)||(37337124-37337172)
[»] chr8 (4 HSPs)
chr8 (141-178)||(3598778-3598815)
chr8 (141-173)||(1513460-1513492)
chr8 (139-187)||(24524035-24524083)
chr8 (139-187)||(36652533-36652581)
[»] chr6 (1 HSPs)
chr6 (138-186)||(25149447-25149493)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1173384 - 1173607
Alignment:
Q  1 aaataaagcaatcaattataaatgaagattgagcggaattcaatggaaggtctatga-----tggaaatcnnnnnnntgcccagtggaatactctttcag 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||       ||||||||||||||||||||| |    
T  1173384 aaataaagcaatcaattataaatgaagattgagcggaattcaatggaaggtctatgaatagatggaaatcaaaaaaatgcccagtggaatactctttcgg 1173483  T
Q  96 tatgtacctgcgagaatcaattcgttgtatatagcatttttcttaaaagaattgaaagaagatagaataataaatagtaaagggtatgatagtnnnnnnn 195  Q
    |||||||  || |||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||           
T  1173484 tatgtactcgcaagaatcaatttgttgtatatagtatttttcttaaaa-aattaaaagaagatagaataataaatagtaaagggtatgatagtaaaaaaa 1173582  T
Q  196 ntattaatgatgtataggtattgta 220  Q
     ||||||||||||||||||||||||    
T  1173583 atattaatgatgtataggtattgta 1173607  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 1175001 - 1175067
Alignment:
Q  237 tttggatcttgtcattgagctctcttattgaataactaagttgtgcattttatacccttaccaatac 303  Q
    ||||||||||||||||||||||| ||| || |||||||||||| |  |||||||||| ||| |||||    
T  1175001 tttggatcttgtcattgagctctattaatggataactaagttgggtgttttatacccatactaatac 1175067  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 32397404 - 32397452
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  32397404 taaaagaattgaaagaagatagagtaataaatagttaaggttataatag 32397452  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 32882268 - 32882220
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  32882268 taaaagaattgaaagaagatagagtaataaatagttaaggttataatag 32882220  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 1167898 - 1167927
Alignment:
Q  14 aattataaatgaagattgagcggaattcaa 43  Q
    ||||||||||||||||||||||||||||||    
T  1167898 aattataaatgaagattgagcggaattcaa 1167927  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 1170383 - 1170412
Alignment:
Q  14 aattataaatgaagattgagcggaattcaa 43  Q
    ||||||||||||||||||||||||||||||    
T  1170383 aattataaatgaagattgagcggaattcaa 1170412  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 38052427 - 38052468
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtat 182  Q
    ||||||||||||||||||| ||||||||||| | ||||||||    
T  38052427 aaagaattgaaagaagataaaataataaataattaagggtat 38052468  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 9012520 - 9012484
Alignment:
Q  150 aaagaagatagaataataaatagtaaagggtatgata 186  Q
    |||||||||||||||||||||||||||| | ||||||    
T  9012520 aaagaagatagaataataaatagtaaagagaatgata 9012484  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 19806961 - 19807009
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||| ||||||||||||||||| ||||||||||| |||| ||| ||||    
T  19806961 taaaataattgaaagaagatagagtaataaatagttaaggttataatag 19807009  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 29086588 - 29086637
Alignment:
Q  138 ttaaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  29086588 ttaaaagaattgaaagaagagagaacaataaatagtaaagggtatgatag 29086637  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 31023726 - 31023772
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    |||||| |||||||||| ||||||||||||||| |||||||| ||||    
T  31023726 aaagaaatgaaagaagagagaataataaatagttaagggtataatag 31023772  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 11030179 - 11030142
Alignment:
Q  145 aattgaaagaagatagaataataaatagtaaagggtat 182  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  11030179 aattgaaagaagagagaataataaatagtcaagggtat 11030142  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 13352596 - 13352559
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagg 178  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  13352596 aaagaattgaaagaagatagagtaataaatagttaagg 13352559  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 43248522 - 43248569
Alignment:
Q  138 ttaaaagaattgaaagaagatagaataataaatagtaaagggtatgat 185  Q
    |||||||||||||||||| | | |||||| ||||||||||||||||||    
T  43248522 ttaaaagaattgaaagaaaagaaaataattaatagtaaagggtatgat 43248569  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 10197955 - 10198001
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  10197955 aaagaattgaaagaagataaagtaataaatagtcaagggtataatag 10198001  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 21134543 - 21134589
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||| ||||||||||||||| |||| ||| ||||    
T  21134543 aaagaattgaaagaagagagaataataaatagttaaggttataatag 21134589  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 42521476 - 42521430
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| ||||    
T  42521476 aaagaattgaaagaagaaagagtaataaatagttaagggtattatag 42521430  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 30440532 - 30440573
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtat 182  Q
    ||||||||||||||||| ||||||||||||||| || |||||    
T  30440532 aaagaattgaaagaagagagaataataaatagttaatggtat 30440573  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 24166749 - 24166781
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagt 173  Q
    ||||||||||||||||| |||||||||||||||    
T  24166749 aaagaattgaaagaagagagaataataaatagt 24166781  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 8050533 - 8050487
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  8050533 aaagaattgaaagaagatagagtaataaatagtcaaggttataatag 8050487  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 36302831 - 36302877
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  36302831 aaagaattgaaagaagatagagtaataaatagttaaggttataatag 36302877  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 6517544 - 6517592
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||| ||| ||||||||||| |||| ||| ||||    
T  6517544 taaaagaattgaaagaagaaagagtaataaatagttaaggatataatag 6517592  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 9227857 - 9227893
Alignment:
Q  138 ttaaaagaattgaaagaagatagaataataaatagta 174  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  9227857 ttaaaagaattgaaaaaagataaaataataaatagta 9227893  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 37337172 - 37337124
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||| ||||||||||||||| ||||||||||| |||| ||| ||||    
T  37337172 taaaagacttgaaagaagatagagtaataaatagttaaggttataatag 37337124  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 3598778 - 3598815
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagtaaagg 178  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  3598778 aaagaattgaaagaagatagagtaataaatagttaagg 3598815  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 1513460 - 1513492
Alignment:
Q  141 aaagaattgaaagaagatagaataataaatagt 173  Q
    ||||||||||||||||||||| |||||||||||    
T  1513460 aaagaattgaaagaagatagagtaataaatagt 1513492  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 24524083 - 24524035
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||||| | ||||||||||| |||| ||| ||||    
T  24524083 taaaagaattgaaagaagataaagtaataaatagttaaggttataatag 24524035  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 36652581 - 36652533
Alignment:
Q  139 taaaagaattgaaagaagatagaataataaatagtaaagggtatgatag 187  Q
    ||||||||||||||||||| ||| ||||||||||| |||| ||| ||||    
T  36652581 taaaagaattgaaagaagaaagagtaataaatagttaaggatataatag 36652533  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 25149447 - 25149493
Alignment:
Q  138 ttaaaagaattgaaagaagatagaataataaatagtaaagggtatgata 186  Q
    |||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  25149447 ttaaaagaattgaaagaag--agagtaataaataataaagggtatgata 25149493  T

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