View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_75 (Length: 319)
Name: NF18974_low_75
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 47139367 - 47139662
Alignment:
| Q |
12 |
agagagtgaaaaagcaga--gtgtacttatgggagttgataaaggtgaatctcaatggtgattacgtaccattagtccgttatgctattttatcattaca |
109 |
Q |
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| T |
47139367 |
agagagtgaaaaagcagatcgtgtacttatgggagttgataaaggtgaatctcaatggtgattacgtaccattagtccgttatgctattttatcattaca |
47139466 |
T |
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| Q |
110 |
gggaaaacattatcattaagctctgacttttgattctggaccccacagtatcagtggtcttcactcttcacctagctggatcaagatccttgtaggccaa |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47139467 |
gggaaaacattatcattaaactctgacttttgattctggaccccacagtatcagtggtcttcactcttcacctagctggatcaagatccttgtaggccaa |
47139566 |
T |
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| Q |
210 |
caattccaacccacaacccataaagacaagtactagtactacatttaatttcttagtagtgtgtgggaaatcagcagcaaatatgtgtgtgggtgt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47139567 |
caattccaacccacaacccataaagacaagtactagtactacgtttattttcttagtagtgtgtgggaaatcagcagcaaatatgtgtgtgtgtgt |
47139662 |
T |
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