View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_77 (Length: 311)
Name: NF18974_low_77
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 5725405 - 5725121
Alignment:
| Q |
19 |
agtttagtatgtccctaaactccttctcatcataccagtcatcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725405 |
agtttagtatgtccctaaactccttctcatcataccagtcatcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttc |
5725306 |
T |
|
| Q |
119 |
cattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725305 |
cattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacata |
5725206 |
T |
|
| Q |
219 |
gtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttcatctc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
5725205 |
gtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagcttgacatgcttcttctc |
5725121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 58 - 303
Target Start/End: Original strand, 4370335 - 4370580
Alignment:
| Q |
58 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
157 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| | |
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| T |
4370335 |
catcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
4370434 |
T |
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| Q |
158 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatg |
257 |
Q |
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||||||||| |||||||||||||||| ||| | || ||| ||||||||| |||| ||||||| ||||||||||||||| | |||| ||| | ||||| |
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| T |
4370435 |
aatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatg |
4370534 |
T |
|
| Q |
258 |
acattgttgtagaaaaaccttgcaatagctcgacatgcttcatctc |
303 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
4370535 |
gcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctctc |
4370580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 303
Target Start/End: Original strand, 4365941 - 4366186
Alignment:
| Q |
58 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
157 |
Q |
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|||| |||||||||||||||||||||| ||||| | |||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| | |
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| T |
4365941 |
catcaaccattatggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
4366040 |
T |
|
| Q |
158 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatg |
257 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||| || ||| ||||||||| |||| ||||||| ||||||||||||||||| |||| || | ||||| |
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| T |
4366041 |
aatctcatcataagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatg |
4366140 |
T |
|
| Q |
258 |
acattgttgtagaaaaaccttgcaatagctcgacatgcttcatctc |
303 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||| |||| |
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| T |
4366141 |
gcattgttgtagaaaaaccttgcaatcacttgacatgcttcctctc |
4366186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 4414352 - 4414147
Alignment:
| Q |
95 |
agctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt-aatctcatcgaaagacggtggcttaaaccctacacc |
193 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||| |||||| |||| ||||||||||||||| || ||||| ||||| |||||| ||| |||| || |
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| T |
4414352 |
agctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaaccc |
4414253 |
T |
|
| Q |
194 |
atgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacat |
293 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | |
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| T |
4414252 |
atgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctcgagaa |
4414153 |
T |
|
| Q |
294 |
gcttca |
299 |
Q |
| |
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|||||| |
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| T |
4414152 |
gcttca |
4414147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 4360539 - 4360716
Alignment:
| Q |
58 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
157 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| |||| | || |||| || ||| |||| |||||||||| | |
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| T |
4360539 |
catcgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatcc |
4360638 |
T |
|
| Q |
158 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcact |
235 |
Q |
| |
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||| ||| ||| |||||||||||| ||||| |||||| ||||||||| ||||||||| || ||||||||||||| |
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| T |
4360639 |
aatatcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact |
4360716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 4390245 - 4390417
Alignment:
| Q |
126 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
225 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | | ||||||||||||||||| ||| || |
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| T |
4390245 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattctaacaa |
4390344 |
T |
|
| Q |
226 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
298 |
Q |
| |
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| || | |||||| ||||| | | | |||| ||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
4390345 |
actccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4390417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 4377562 - 4377734
Alignment:
| Q |
126 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
225 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | | ||||||||||||||||| || || |
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| T |
4377562 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattcgaacaa |
4377661 |
T |
|
| Q |
226 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
298 |
Q |
| |
|
| || |||||| ||||| | | |||| | |||||||||||||||||| ||||| |||||||| ||||| |
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| T |
4377662 |
actccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4377734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 4385132 - 4385304
Alignment:
| Q |
126 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
225 |
Q |
| |
|
|||| |||||| ||| ||||||| |||||| |||||||||| ||||| || ||| ||||||||||||| | | ||||||||| ||||||| || || |
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| T |
4385132 |
aacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcacaaaccctacaccacatctcgaaaccatagcacacatttgaacaa |
4385231 |
T |
|
| Q |
226 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
298 |
Q |
| |
|
| || |||||| ||||| | | | |||| ||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
4385232 |
actccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4385304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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