View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_78 (Length: 309)
Name: NF18974_low_78
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_78 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 43001856 - 43002149
Alignment:
| Q |
1 |
cattagttgcgacatcgtatggaaatactagtgtgaatgagttgattactagttcaagttttgtgaagcaaacaaatattgatgaagagaaatggaatta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
43001856 |
cattagttgcgacatcgtatagaaatactagtgtgaatgagttgattactagttcaagttttgtgaagctaacaaatatggatgaagagaaatggaatta |
43001955 |
T |
|
| Q |
101 |
gtttctttagaattttcaaaggttattggtcctagcttctgttaattgcaaagaaaggaatgtgagaaagagggagagacaaagacttggaacatcatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43001956 |
gtttctttagaattttcaaaggttattggtcctagcttctgttaattgcaaagaaaggaatgtgagaaagagggagagacaaagacttggaacatcatac |
43002055 |
T |
|
| Q |
201 |
cagttttagaggcattatacatgaatattgtgtgaaacaataaagttttagaggcttgtgcaatgtgtcacacggtatagcttgaattatatat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43002056 |
cagttttagaggcattatacatgaatattgtgtgaaacaataaagttttagaggcttgtgcaatgtgtcacacggtataccttgaattatatat |
43002149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 5512199 - 5512492
Alignment:
| Q |
1 |
cattagttgcgacatcgtatggaaatactagtgtgaatgagttgattactagttcaagttttgtgaagcaaacaaatattgatgaagagaaatggaatta |
100 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |
|
|
| T |
5512199 |
cattagttgggacatcatctggaaatactagtgtgaatgagttgattactagttcaagttttgtgaagctgacagatatggatgaagagaaatggaacca |
5512298 |
T |
|
| Q |
101 |
gtttctttagaattttcaaaggttattggtcctagcttctgttaattgcaaagaaaggaatgtgagaaagagggagagacaaagacttggaacatcatac |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| | |
|
|
| T |
5512299 |
gtttcttgagaattttcaaaggttattggtcccagcttttgttaattgcaaagaaaggaatttgggaaagaggcagagacaaagacttggaacatcatgc |
5512398 |
T |
|
| Q |
201 |
cagttttagaggcattatacatgaatattgtgtgaaacaataaagttttagaggcttgtgcaatgtgtcacacggtatagcttgaattatatat |
294 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5512399 |
cagttttagaggcattataaatgaatattgtgtgaaacaataaacttttaaaggtctgtgcaatgtgtcacaccgtataccttgaattatatat |
5512492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University