View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_84 (Length: 293)
Name: NF18974_low_84
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 20422275 - 20422146
Alignment:
| Q |
13 |
attcttagtgttttctcttatttaatgtcagccaaggaatttaagatattaattaaagttaaaatttcacttacataaggaatttaaacaataatttatt |
112 |
Q |
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| T |
20422275 |
attcttagtgttttctcttatttaatgtcagccaaggaatttaagatattaattaaagttaaaatttcacttacataaggaatttaaacaataatttatt |
20422176 |
T |
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| Q |
113 |
caactaagaaataatttattcaggaataat |
142 |
Q |
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| T |
20422175 |
caactaagaaataatttattcaggaataat |
20422146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 20422145 - 20422044
Alignment:
| Q |
178 |
ttagttagatgtatcgtatctagatgacagttgtgtt-----cctagttggttagaaagtatcgaagatgtataaccagaaatattcctaaaacagactg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20422145 |
ttagttagatgtatcgtatctagatgacagttgtgttgtgttcctagttggttagaaagtatcgaagatgtatcaccagaaatattcctaaaacagactg |
20422046 |
T |
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| Q |
273 |
ag |
274 |
Q |
| |
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|| |
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| T |
20422045 |
ag |
20422044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 27444410 - 27444310
Alignment:
| Q |
14 |
ttcttagtgttttctcttatttaatgtcagccaaggaatttaagatatta-attaaagttaaaatttcacttacataaggaatttaaacaataatttatt |
112 |
Q |
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||||||||||||||||||||||||||||||| | ||||| ||||||||| || ||||||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
27444410 |
ttcttagtgttttctcttatttaatgtcagctagggaatcaaagatattatataaaagttaaa-tttcaattgcataaggaatttaaacaataatttatt |
27444312 |
T |
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| Q |
113 |
ca |
114 |
Q |
| |
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|| |
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| T |
27444311 |
ca |
27444310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 27441590 - 27441522
Alignment:
| Q |
46 |
aaggaatttaagatattaattaaagttaaaatttcacttacataaggaatttaaacaataatttattca |
114 |
Q |
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|||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27441590 |
aaggaattaacgatattaatcaaagttaaaatttcacttgcataaggaatttaaacaataatttattca |
27441522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 27441639 - 27441609
Alignment:
| Q |
14 |
ttcttagtgttttctcttatttaatgtcagc |
44 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27441639 |
ttcttagtgttttctcttatttaatgtcagc |
27441609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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