View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_88 (Length: 288)
Name: NF18974_low_88
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 50506221 - 50506478
Alignment:
| Q |
12 |
aagctttaggaatatgactccttaatacttataatcatgttcagagaggttaaacaaacagtatgttactaacaatgaacaaaattaacaaataaaacat |
111 |
Q |
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| T |
50506221 |
aagctttaggaatatgactccttaatacttataatcatgttcagagaggttaaa-aaacagtatgttactaacaataaacaaaattaacaaataaaacat |
50506319 |
T |
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| Q |
112 |
caaacagaagatcctagaaataaattcatcaaaacagtcaatgtgctcaatcacctgaacaagccagtgaaaattttgaagcccctcactgttttcaact |
211 |
Q |
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| T |
50506320 |
caaacagaagatcctagaaataaattcatcaaaacagtcaatgtgctcaatcacctgaacaagccagtgaaaattttgaagcccctcactgttttcaact |
50506419 |
T |
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| Q |
212 |
tccgcaacagcccctatcttggttgtgatgaaggagatatgctcattccccatcacaat |
270 |
Q |
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| T |
50506420 |
tccgcaacagcccctatcttggttgtgatgaaggagatatgctcattccccatcacaat |
50506478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 55280190 - 55280162
Alignment:
| Q |
242 |
aaggagatatgctcattccccatcacaat |
270 |
Q |
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| T |
55280190 |
aaggagatatgctcattccccatcacaat |
55280162 |
T |
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