View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_low_9 (Length: 628)

Name: NF18974_low_9
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_low_9
NF18974_low_9
[»] chr2 (1 HSPs)
chr2 (13-610)||(15905649-15906274)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 610
Target Start/End: Complemental strand, 15906274 - 15905649
Alignment:
Q  13 aatatctacagttttctcttgagtttcagattgagatttcaccactgtactaattatttcaggtgttttattgggattctatatagtttggaaagtgtaa 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15906274 aatatctacagttatctcttgagtttcagattgagatttcaccactgtactaattatttcaggtgttttattgggattctatatagtttggaaagtgtaa 15906175  T
Q  113 atttcattggcttgggatttgaaattgataatggcctttatggtatattaacacttcttaaaa---------------catacgtcggggtctgataccg 197  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||               |||| |||||||||||||||||    
T  15906174 atttcattggcttgggatttgaaattgataatggactctatagtatattaacacttcttaaaatgatctattgttcgacataggtcggggtctgataccg 15906075  T
Q  198 acacatatgattatattagtacagtataaacgatgtatcggtatcgatacttcatcataaataatgattactttcatatacataaaagtcttgttgaaag 297  Q
    |  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15906074 atccatatgattatattagtgcagtataaacgatgtatcggtatcgatacttcatcataaataatgattactttcatatacataaaagtcttgttgaaag 15905975  T
Q  298 ctatgattaaggatcatgcctaaacttcatctcaaatctnnnnnnnctaattgacaagaattttcaatgaaaaacttttcctttgcctttacttcaaatg 397  Q
    |||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15905974 ctatgattaaggatcatgcctaaacttcttctcaaatctagaaaaactaattgacaagaattttcaatgaaaaacttttcctttgcctttacttcaaatg 15905875  T
Q  398 aaaggattgacaagataaataacaattttttaaaaataaaattggcccttttcctt-tattttg----gtt--------gttattattttcatgtcagtc 484  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||  ||    |||        |||||||||||||||||||||    
T  15905874 aaaggattgacaacataaataacaattttttaaaaataaaattggcccttttccttatatgctgctaagttttattttggttattattttcatgtcagtc 15905775  T
Q  485 cnnnnnnntatatccgtgaaaagcaaattttgtttcaattttgaataaagaagtgaatttaaaacctactattttgaatttctatatgctagagcctaga 584  Q
    |       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15905774 caaaaaaatatatccgtgaaaagcaaattttgtttcaactttgaataaagaagtgaatttaaaacctactattttgaatttctatatgctagagcctaga 15905675  T
Q  585 ggactaaggtgctataaaataatact 610  Q
    ||||||||||||||||||||||||||    
T  15905674 ggactaaggtgctataaaataatact 15905649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University