View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_90 (Length: 286)
Name: NF18974_low_90
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_90 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 8296729 - 8296457
Alignment:
| Q |
1 |
atattctgaaattttttcttgatgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296729 |
atattctgaaaatttttcttgatgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaat |
8296630 |
T |
|
| Q |
101 |
gtcttccccaaatatttatgtggaatcaatggacagtttaagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8296629 |
gtcttccccaaatatttatgtggaatcaatggacagtttaagctatttccaatttcctgatgaagtttggtttttgcatatttaaaaaccaaaagagtga |
8296530 |
T |
|
| Q |
201 |
actttgtctttaaatttgcttgaaactttggttttagtttcatttggttcattataacaatcaaattcttctc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8296529 |
actttgtctttaaatttgcttgaaactttggttttggtttcatttagttcattataacaatcaaattcttctc |
8296457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8300306 - 8300054
Alignment:
| Q |
1 |
atattctgaaattttttcttgatgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaat |
100 |
Q |
| |
|
||||||| ||| ||| |||||||| ||||| |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8300306 |
atattctaaaaatttctcttgatgctatccactgccttgctaatttcatttcctgcttttgggtatttgtttgaatctggagatttctcttaatgttaat |
8300207 |
T |
|
| Q |
101 |
gtcttccccaaatatttatgtggaatcaatggacagtttaagctatttccaattgcctgat-gaagtttggtttttgcatttttaaaaaccaaaagagtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8300206 |
gtcttccccaaatatttatgtggaatcaatggacagtttaagctatttccaattgcctgatggaagtttggtttttgcatatttaaaaaccaaaagagtg |
8300107 |
T |
|
| Q |
200 |
aactttgtctttaaatttgcttgaaactttggttttagtttcatttggttcattataacaatcaa |
264 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8300106 |
aactttgtctttaaa------------tttggttttagtttcatttagttcattataacaatcaa |
8300054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 139 - 273
Target Start/End: Original strand, 18280154 - 18280288
Alignment:
| Q |
139 |
taagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaaactttggttttagt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
18280154 |
taagctatttccaattgcctgatgaagtttggtttttgcatatttaaaaaccaaaagagtgaacattgtctttaaatttgcttgaaactttggttttggc |
18280253 |
T |
|
| Q |
239 |
ttcatttggttcattataacaatcaaattcttctc |
273 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| |
|
|
| T |
18280254 |
ttcatttagttcattataccaatcaaattcttctc |
18280288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 18279942 - 18280081
Alignment:
| Q |
3 |
attctgaaattttttcttgatgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgt |
102 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||| | ||||||||||||| ||||||||| |||||||||||||||||| || |||| |||||||||||| | |
|
|
| T |
18279942 |
attctgaaaatttctcttgatgttaacctcttccttgctaatttcatttcctgcttttgggtatttgtttgaatctagaaatttatcttaatgttaacat |
18280041 |
T |
|
| Q |
103 |
cttccccaaatatttatgtggaatcaatggacagtttaag |
142 |
Q |
| |
|
|| |||||||| |||||||||||| |||| ||| |||||| |
|
|
| T |
18280042 |
ctgccccaaatttttatgtggaatgaatgcacaatttaag |
18280081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18281791 - 18281890
Alignment:
| Q |
1 |
atattctgaaattttttcttgatgttatcctctgctttgctaatttcatgtcctgc-tttagggtatttgtttgaatctggagatttctcttaatgttaa |
99 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||| || | ||||||| |||||| || ||||||| ||||||| ||| | ||||||||| ||||||| |
|
|
| T |
18281791 |
atattctgaaattttctcttgatattaacctctgccttagttatttcatttcctgcactttgggtattagtttgaacctgaaaatttctcttgatgttaa |
18281890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 1144931 - 1144798
Alignment:
| Q |
139 |
taagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaaactttggttttagt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| | |
|
|
| T |
1144931 |
taagctatttccaattgcctgatgaagtttgttttttgcatatttaaaaaccaaaagtttgaactttgcctttaaatttgcttggaactttggttttggc |
1144832 |
T |
|
| Q |
239 |
ttcatttggttcattataacaatcaaattcttctc |
273 |
Q |
| |
|
|||| || ||||||| |||||||||||||||||| |
|
|
| T |
1144831 |
ttca-ttagttcatttgaacaatcaaattcttctc |
1144798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University