View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_94 (Length: 269)
Name: NF18974_low_94
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 34360777 - 34360878
Alignment:
| Q |
28 |
caacccacttacgccactcctgccgcatacagtttctcaattcccgctataccaagactgatcctgtt-aacaattatgttaaccatgcatttcagggta |
126 |
Q |
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| T |
34360777 |
caacccacttaaaccactcccgccgcatacagtttctcaattcccgctatacaaagactgatcctgttaaacaattatgttaaccatgcatttcagggta |
34360876 |
T |
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| Q |
127 |
ta |
128 |
Q |
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|| |
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| T |
34360877 |
ta |
34360878 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 34361204 - 34361244
Alignment:
| Q |
223 |
ctgtctcatcatgtttaccatcaggtgcctttgctactcct |
263 |
Q |
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| T |
34361204 |
ctgtttcatcatgtttaccatcaggtgcctgtgttactcct |
34361244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 25291387 - 25291434
Alignment:
| Q |
96 |
aacaattatgttaaccatgcatttcagggtatagctgttgaaattcat |
143 |
Q |
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||||||||||||||| ||| |||||| ||||||||||||||||||||| |
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| T |
25291387 |
aacaattatgttaactatgtatttcatggtatagctgttgaaattcat |
25291434 |
T |
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