View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_99 (Length: 254)
Name: NF18974_low_99
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 12861167 - 12860954
Alignment:
| Q |
23 |
aacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggttt |
122 |
Q |
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| T |
12861167 |
aacaaccaatttcttcgtttcagagtttccacagtttttttta-tttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggttt |
12861069 |
T |
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| Q |
123 |
aattatctatgannnnnnnnnnnnnnnnnngccaattggctatgtttctgctttctatcactaatcactatgttgagcatactatggttagcaaagggct |
222 |
Q |
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| T |
12861068 |
aattatctatgttttttttttttttttgttgccaattggctatgtttctgctttctatcactaatcactatgttgagcatactacggttagcaaagggct |
12860969 |
T |
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| Q |
223 |
ataggtctctcgttc |
237 |
Q |
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| T |
12860968 |
ataggtctctcgttc |
12860954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 12844345 - 12844459
Alignment:
| Q |
18 |
gttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12844345 |
gttacaacaaccaatttcttcgtttcagagtttccacagttttttta--tttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattgg |
12844442 |
T |
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| Q |
118 |
ggtttaattatctatga |
134 |
Q |
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||||||||| ||||||| |
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| T |
12844443 |
ggtttaattgtctatga |
12844459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 12844507 - 12844555
Alignment:
| Q |
191 |
tatgttgagcatactatggttagcaaagggctataggtctctcgttcat |
239 |
Q |
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|||||||||||||||| |||||||| | |||||||||||| | |||||| |
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| T |
12844507 |
tatgttgagcatactacggttagcacaaggctataggtctttggttcat |
12844555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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