View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18975_high_4 (Length: 420)
Name: NF18975_high_4
Description: NF18975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18975_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 47781005 - 47781313
Alignment:
| Q |
1 |
agataaaattagataggatacatcatataagtaaaaataactggtatagttaattgtgttttggaagtatatacttgctcatgnnnnnnntgcatataat |
100 |
Q |
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| T |
47781005 |
agataaaattagataggatacat---atatgtaaaaataactggtatagttaattgtgttttggaagtatatacttgctcatgaaaaaaatgcatataat |
47781101 |
T |
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| Q |
101 |
aagatgttgacatttaaagatagtgcaaagaaatctgcatgagaaattacaacatcgataccaaacagcatatatccataaacaaaacaaacaagatctt |
200 |
Q |
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| T |
47781102 |
aagatgttgacatttaaagatagtgcaaagaaatctgcatgagaaattacaatatcgatactaaacagcatatatccataaacaaaacaaacaagatctt |
47781201 |
T |
|
| Q |
201 |
gaatttagagatagagtgggatgtaaggtggccagtatcgtattggggaattaaatgaag-aaaaaatactttttgacaccaaatgaagaaaatgggaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
47781202 |
gaatttagagatagagtgggatgtaaggtggccaatatcgtattggggaattaaatgaagaaaaaaaaactttttgacaccaaatgaagaaaatgggaat |
47781301 |
T |
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| Q |
300 |
cgatacttgtac |
311 |
Q |
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|||||||||||| |
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| T |
47781302 |
cgatacttgtac |
47781313 |
T |
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