View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18975_low_3 (Length: 486)

Name: NF18975_low_3
Description: NF18975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18975_low_3
NF18975_low_3
[»] chr3 (4 HSPs)
chr3 (16-470)||(25850523-25850977)
chr3 (46-93)||(35508327-35508374)
chr3 (16-45)||(22470402-22470431)
chr3 (13-45)||(2508719-2508751)
[»] chr8 (5 HSPs)
chr8 (13-45)||(19705051-19705083)
chr8 (13-47)||(24518586-24518620)
chr8 (16-45)||(21695413-21695442)
chr8 (14-47)||(24389822-24389855)
chr8 (17-45)||(12342891-12342919)
[»] chr7 (6 HSPs)
chr7 (16-47)||(13280827-13280858)
chr7 (17-46)||(7399396-7399425)
chr7 (16-45)||(9078881-9078910)
chr7 (16-45)||(10332472-10332501)
chr7 (16-45)||(20577559-20577588)
chr7 (16-45)||(23173685-23173714)
[»] chr5 (3 HSPs)
chr5 (46-96)||(32746273-32746323)
chr5 (16-45)||(17831761-17831790)
chr5 (16-45)||(26315254-26315283)
[»] chr1 (5 HSPs)
chr1 (17-47)||(15542306-15542336)
chr1 (16-45)||(24464682-24464711)
chr1 (17-45)||(15526806-15526834)
chr1 (17-45)||(27912133-27912161)
chr1 (45-97)||(34738762-34738814)
[»] scaffold0043 (1 HSPs)
scaffold0043 (16-45)||(88436-88465)
[»] chr6 (1 HSPs)
chr6 (16-45)||(21687129-21687158)
[»] chr4 (3 HSPs)
chr4 (16-45)||(17277913-17277942)
chr4 (16-44)||(8968072-8968100)
chr4 (13-45)||(9849707-9849739)
[»] chr2 (4 HSPs)
chr2 (17-45)||(17891800-17891828)
chr2 (16-44)||(18120546-18120574)
chr2 (13-45)||(32130699-32130731)
chr2 (13-45)||(32139334-32139366)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 25850977 - 25850523
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatcattgtatgtgcaaggttgttttgtattgtcaaccaaccaccattaaactctatatatcgcataatcnnnnn 115  Q
    ||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||          
T  25850977 ctaagaataacataagatgacctgtcttcattgtgtgtgcaaggttgttttgtattgtcaaccaaccaccattaaactctatatatcacattatttattt 25850878  T
Q  116 nna--aaattgatcttatatgcatttacttaaattaagttttaaatatcaatcaattattggttatgttcttttgacgaaaaaacatatggataaaatgt 213  Q
         |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||    
T  25850877 tttttaaattgatcttatacgcatttacttaaattaagttttaaatatcaatcaattattggttatcttcttttgacgaaaaaa-atatggttaaaatgt 25850779  T
Q  214 cttagaatcaatcactattttgttatgtgaaatgatggctcactttaattgagtcgtgtcagtttgttaagtacctcaaaatgtccatgaatctttttgg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  25850778 cttagaatcaatcactattttgttatgtgaaatgatggctcactttaattgagtcgtgtcagtttgttaagtacctc-aaatgtccatgaatcttttttg 25850680  T
Q  314 taaatgtcagggtttaatttgtcatattcccttttattcatagtaggcannnnnnnatnnnnnnntatgctattcaaatatttttgttata--ctcttgt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |       ||||||||||||||||||||||||||  |||||||    
T  25850679 taaatgtcagggtttaatttgtcatattcccttttattcatagtaggcatttttt--tttttcaatatgctattcaaatatttttgttatactctcttgt 25850582  T
Q  412 tttgaaatatgctattcaaatttgtgttcttcatttagaaaactaaattgggtcagcat 470  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  25850581 tttgaaatatgctattcgaatttgtgttcatcatttagaaaactaaattgggtcagcat 25850523  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 35508374 - 35508327
Alignment:
Q  46 ttgtatgtgcaaggttgttttgtattgtcaaccaaccaccattaaact 93  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  35508374 ttgtatgtgcaaagttgttttggattgtcaacccaccaccattaaact 35508327  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 22470431 - 22470402
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  22470431 ctaagaataacgtaagatgacatgtcatca 22470402  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 2508751 - 2508719
Alignment:
Q  13 atactaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||| |||||    
T  2508751 atactaagaataacgtaagatgacatgccatca 2508719  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 19705051 - 19705083
Alignment:
Q  13 atactaagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  19705051 atactaagaataacgtaagatgacatgtcatca 19705083  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 24518620 - 24518586
Alignment:
Q  13 atactaagaataacgtaagatgacatgtcatcatt 47  Q
    |||||||||||||||| ||||||||||||||||||    
T  24518620 atactaagaataacgttagatgacatgtcatcatt 24518586  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 21695442 - 21695413
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  21695442 ctaagaataacgtaagatgacatgtcatca 21695413  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 24389822 - 24389855
Alignment:
Q  14 tactaagaataacgtaagatgacatgtcatcatt 47  Q
    ||||||||||||||||||||||| ||||||||||    
T  24389822 tactaagaataacgtaagatgacctgtcatcatt 24389855  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 12342919 - 12342891
Alignment:
Q  17 taagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||||||||    
T  12342919 taagaataacgtaagatgacatgtcatca 12342891  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 13280827 - 13280858
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatcatt 47  Q
    ||||||||||||||||||||||||||||||||    
T  13280827 ctaagaataacgtaagatgacatgtcatcatt 13280858  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 7399396 - 7399425
Alignment:
Q  17 taagaataacgtaagatgacatgtcatcat 46  Q
    ||||||||||||||||||||||||||||||    
T  7399396 taagaataacgtaagatgacatgtcatcat 7399425  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 9078910 - 9078881
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  9078910 ctaagaataacgtaagatgacatgtcatca 9078881  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 10332472 - 10332501
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  10332472 ctaagaataacgtaagatgacatgtcatca 10332501  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 20577559 - 20577588
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  20577559 ctaagaataacgtaagatgacatgtcatca 20577588  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 23173714 - 23173685
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  23173714 ctaagaataacgtaagatgacatgtcatca 23173685  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 32746323 - 32746273
Alignment:
Q  46 ttgtatgtgcaaggttgttttgtattgtcaaccaaccaccattaaactcta 96  Q
    |||||||||||| ||||||||| | |||||||| |||| ||||||||||||    
T  32746323 ttgtatgtgcaaagttgttttgaactgtcaacccaccagcattaaactcta 32746273  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 17831761 - 17831790
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  17831761 ctaagaataacgtaagatgacatgtcatca 17831790  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 26315254 - 26315283
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  26315254 ctaagaataacgtaagatgacatgtcatca 26315283  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 15542336 - 15542306
Alignment:
Q  17 taagaataacgtaagatgacatgtcatcatt 47  Q
    |||||||||||||||||||||||||||||||    
T  15542336 taagaataacgtaagatgacatgtcatcatt 15542306  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 24464682 - 24464711
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  24464682 ctaagaataacgtaagatgacatgtcatca 24464711  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 15526834 - 15526806
Alignment:
Q  17 taagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||||||||    
T  15526834 taagaataacgtaagatgacatgtcatca 15526806  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 27912133 - 27912161
Alignment:
Q  17 taagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||||||||    
T  27912133 taagaataacgtaagatgacatgtcatca 27912161  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 34738762 - 34738814
Alignment:
Q  45 attgtatgtgcaaggttgttttgtattgtcaaccaaccaccattaaactctat 97  Q
    |||||||||||||  |||||||| |  ||||||| ||||||||||||||||||    
T  34738762 attgtatgtgcaaaattgttttggaccgtcaacccaccaccattaaactctat 34738814  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 88465 - 88436
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  88465 ctaagaataacgtaagatgacatgtcatca 88436  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 21687158 - 21687129
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  21687158 ctaagaataacgtaagatgacatgtcatca 21687129  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 17277913 - 17277942
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatca 45  Q
    ||||||||||||||||||||||||||||||    
T  17277913 ctaagaataacgtaagatgacatgtcatca 17277942  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 8968100 - 8968072
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatc 44  Q
    |||||||||||||||||||||||||||||    
T  8968100 ctaagaataacgtaagatgacatgtcatc 8968072  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 9849739 - 9849707
Alignment:
Q  13 atactaagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||| ||||||||    
T  9849739 atactaagaataacgtaagatgacctgtcatca 9849707  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 17891800 - 17891828
Alignment:
Q  17 taagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||||||||    
T  17891800 taagaataacgtaagatgacatgtcatca 17891828  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 18120574 - 18120546
Alignment:
Q  16 ctaagaataacgtaagatgacatgtcatc 44  Q
    |||||||||||||||||||||||||||||    
T  18120574 ctaagaataacgtaagatgacatgtcatc 18120546  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 32130731 - 32130699
Alignment:
Q  13 atactaagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||| ||||||||    
T  32130731 atactaagaataacgtaagatgacctgtcatca 32130699  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 32139366 - 32139334
Alignment:
Q  13 atactaagaataacgtaagatgacatgtcatca 45  Q
    |||||||||||||||||||||||| ||||||||    
T  32139366 atactaagaataacgtaagatgacctgtcatca 32139334  T

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