View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18976_high_2 (Length: 268)

Name: NF18976_high_2
Description: NF18976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18976_high_2
NF18976_high_2
[»] chr5 (2 HSPs)
chr5 (141-250)||(2591562-2591671)
chr5 (16-92)||(2591442-2591518)
[»] chr8 (3 HSPs)
chr8 (141-237)||(41350367-41350463)
chr8 (144-213)||(5948223-5948292)
chr8 (144-213)||(5983836-5983905)
[»] chr4 (1 HSPs)
chr4 (172-209)||(53557726-53557763)
[»] chr1 (1 HSPs)
chr1 (175-208)||(38707210-38707243)
[»] chr7 (1 HSPs)
chr7 (157-209)||(44676854-44676906)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 2591562 - 2591671
Alignment:
Q  141 atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2591562 atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtca 2591661  T
Q  241 tcttcttctg 250  Q
    ||||||||||    
T  2591662 tcttcttctg 2591671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 2591442 - 2591518
Alignment:
Q  16 attctagtcaagtttttctctaaatgtatgcttataaatcacggttttatttttatttaagaatcttaattacaaag 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2591442 attctagtcaagtttttctctaaatgtatgcttataaatcacggttttatttttatttaagaatcttaattacaaag 2591518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 41350463 - 41350367
Alignment:
Q  141 atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaag 237  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||||||||| ||||||    
T  41350463 atgcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaataaagaattactggaattcttggatcaaaaagaaaataagaaag 41350367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 5948292 - 5948223
Alignment:
Q  144 cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca 213  Q
    |||||||||||| |||||||  ||||| ||||| |||||||| ||||| |||||||||| ||||||||||    
T  5948292 cagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattca 5948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 5983905 - 5983836
Alignment:
Q  144 cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca 213  Q
    |||||||||||| |||||||  ||||| ||||| |||||||| |||||  | ||||||| ||||||||||    
T  5983905 cagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattca 5983836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 53557726 - 53557763
Alignment:
Q  172 cctggtagaacagacaatgaaataaaaaactattggaa 209  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  53557726 cctggaagaacagacaatgacataaaaaactattggaa 53557763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 38707210 - 38707243
Alignment:
Q  175 ggtagaacagacaatgaaataaaaaactattgga 208  Q
    |||||||| |||||||||||||||||||||||||    
T  38707210 ggtagaacggacaatgaaataaaaaactattgga 38707243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 44676906 - 44676854
Alignment:
Q  157 attgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaa 209  Q
    ||||||||||||||||| || ||||||||||| || || |||||||| |||||    
T  44676906 attgcaagtcacttgccaggcagaacagacaacgagattaaaaactactggaa 44676854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University