View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18977_high_10 (Length: 236)
Name: NF18977_high_10
Description: NF18977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18977_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 53699425 - 53699644
Alignment:
| Q |
1 |
ctggcatacaatccagaaagttaacacaccacttagagaaataattacttcaaatggagaactgaaaa-aatgacttttaaaggcgcaacgtacttgatt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53699425 |
ctggcatacaatccagaaagttaacacaccacttagagaaataattacttcaaatggagaactgaaaaaaatgacttttaaaggcgcaacgtacttgatt |
53699524 |
T |
|
| Q |
100 |
ttgcatttggtgtatgtgttaccattgttaatttgttatgaagcagaaaattacgtgttccccacttaaaaaacacaaaatggaaagctatatgcctata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53699525 |
ttgcatttggtgtatgtgttaccattgttaatttgttatgaagcagaaaattacgtgttccccacttaaaaaacacaaaatggaaagctatatgcctata |
53699624 |
T |
|
| Q |
200 |
tctattatagtgctgttgat |
219 |
Q |
| |
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|||||||||||||||||||| |
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| T |
53699625 |
tctattatagtgctgttgat |
53699644 |
T |
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