View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18977_high_3 (Length: 558)

Name: NF18977_high_3
Description: NF18977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18977_high_3
NF18977_high_3
[»] chr5 (18 HSPs)
chr5 (18-546)||(14391093-14391625)
chr5 (18-343)||(14397377-14397711)
chr5 (409-546)||(14397740-14397877)
chr5 (99-380)||(16024441-16024735)
chr5 (197-354)||(14393060-14393223)
chr5 (491-538)||(13857634-13857681)
chr5 (96-237)||(13882112-13882256)
chr5 (34-81)||(16024844-16024891)
chr5 (18-95)||(14392837-14392914)
chr5 (150-227)||(13883931-13884008)
chr5 (31-80)||(40165857-40165906)
chr5 (495-538)||(13866153-13866196)
chr5 (18-72)||(13871875-13871929)
chr5 (500-538)||(14358599-14358637)
chr5 (416-454)||(16024335-16024373)
chr5 (18-75)||(13882352-13882409)
chr5 (509-546)||(14389943-14389980)
chr5 (496-528)||(16021913-16021945)
[»] chr8 (2 HSPs)
chr8 (158-256)||(29625322-29625420)
chr8 (158-256)||(26202120-26202218)


Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 14391093 - 14391625
Alignment:
Q  18 ataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataactttgcagggggaagaaatttgtggtgaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  14391093 ataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataattttgcagggggaagaaatttgtggtaaag 14391192  T
Q  118 ccagagaagaaaattatatggaaatgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggttctgaaaatgtttatgtttctgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14391193 ccagagaagaaaattatatggaaatgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggttctaaaaatgtttatgtttctgg 14391292  T
Q  218 aatcgaatctaatgatggtgaggagtgttctcgagaagagcacacgatggagaacatgataataaggctgaaggtgaagttgaaggaatagctgatgccc 317  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391293 aatcgaatctaatgatggtgagtagtgttctcgagaagagcacgcgatggagaacatgataataaggctgaaggtgaagttgaaggaatagctgatgccc 14391392  T
Q  318 atgttgaagaagatggaatgtcattgccattttctgagcgatttcttccaagtgtgaagccatcggctaggcattgtca----nnnnnnnnnatagaaag 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             ||||||||    
T  14391393 atgttgaagaagatggaatgtcattgccattttctgagcgatttcttccaagtgtgaagccatcggctaggcattatcatttttatttatttatagaaag 14391492  T
Q  414 gtctccttttatgtgctgattagacttcagcaggtacaaaaatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattcttcat 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391493 gtctccttttatgtgctgattagacttcagcaggtacaaaaatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattcttcat 14391592  T
Q  514 aaacaagcctaatgtagtgattttgtacatatt 546  Q
    |||||||||||||||||||||||||||||||||    
T  14391593 aaacaagcctaatgtagtgattttgtacatatt 14391625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 14397377 - 14397711
Alignment:
Q  18 ataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataactttgcagggggaagaaatttgtggtgaag 117  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||    
T  14397377 ataccaagaataatcaaatcgatagttcaaaagcgaaagagaagagggtgtgttatctccatatagataattttgcagggg-aagaagtttgtggtgaag 14397475  T
Q  118 ccagagaagaaaattatatgga----aatgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggttctgaaaatgtttatgttt 213  Q
       |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||    
T  14397476 gaggagaagaaaattatatggatcttaatgatgaagggga-agaaagtcctcataggtcatcggaggacaatgaaaatggttctgaaaatgttgttgttt 14397574  T
Q  214 ctggaatcgaatctaatgatggtgaggagtgttctcgagaagagcac-acgatggagaacatgataataaggc------tgaaggtgaagttgaaggaat 306  Q
    | ||||  ||||||| | ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||      ||||||||| | |||||||||    
T  14397575 caggaagtgaatctactaatggtgaggagtgttctcgagaagagcgcgacgatggagaatatgataataaggctcaaggtgaaggtgaggctgaaggaat 14397674  T
Q  307 agctgatgcccatgttgaagaagatggaatgtcattg 343  Q
     |||||||||  |||||||| ||||| ||||| ||||    
T  14397675 ggctgatgccggtgttgaaggagatgaaatgtaattg 14397711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 409 - 546
Target Start/End: Original strand, 14397740 - 14397877
Alignment:
Q  409 gaaaggtctccttttatgtgctgattagacttcagcaggtacaaaaatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattc 508  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  14397740 gaaaggtctccttttatgtgctggttagacttcagcaggtacaaaaatatattgtttcaatttgtacaggcagcacagttaagttatatgtatgtcattc 14397839  T
Q  509 ttcataaacaagcctaatgtagtgattttgtacatatt 546  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  14397840 ttcataaacaagcttaatgttgtgattttgtacatatt 14397877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 380
Target Start/End: Complemental strand, 16024735 - 16024441
Alignment:
Q  99 gaagaaatttgtggtgaagccagagaagaaaattat----atggaaatgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggt 194  Q
    |||||| |||||||||||||||||| ||||||||||    |||   ||||||||||||  |||||||||||| |||||||| |||| || |||||| | |    
T  16024735 gaagaagtttgtggtgaagccagaggagaaaattatgcagatgctgatgatgaagggga-agaaagtcctcagaggtcatcagagggcagtgaaaacgct 16024637  T
Q  195 tctgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaagagca-cacgatggagaacatgataataaggc------tg 287  Q
    |||| ||| ||| ||||||||||||  ||||||  |||||| |||||||| |||| |||||||||  | ||||||||||||||| |||||||      ||    
T  16024636 tctggaaacgttgatgtttctggaagtgaatctgctgatggagaggagtgctctcaagaagagcatgatgatggagaacatgatgataaggctgaaagtg 16024537  T
Q  288 aaggtgaagttgaaggaatagctgatgccc---atgttgaagaagatggaatgtcattgccattttctgagcgatttcttccaagtgtgaagccat 380  Q
    ||||||||| ||||||||| |||||||| |   ||||||||| ||||||||  ||||| ||||||||||| || ||||||| || |||||||||||    
T  16024536 aaggtgaagctgaaggaatggctgatgcacatgatgttgaaggagatggaacatcattaccattttctgaacgctttcttctaaatgtgaagccat 16024441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 354
Target Start/End: Original strand, 14393060 - 14393223
Alignment:
Q  197 tgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaagagcaca-cgatggagaacatgataataaggctgaaggtgaa 295  Q
    |||||||||| |||||| ||||| ||||| ||  |||||||||||||||||||||||| |||| |  |||||||||| ||||| |||||||||| |||||    
T  14393060 tgaaaatgttgatgtttttggaagcgaatatacagatggtgaggagtgttctcgagaaaagcatagggatggagaacgtgatagtaaggctgaaagtgaa 14393159  T
Q  296 gttgaag-----gaatagctgatgcccatgttgaagaagatggaatgtcattgccattttctga 354  Q
    | |||||       || ||| |||||| |||||||| |||||||||||||||||||||||||||    
T  14393160 ggtgaagctaaatgatggctaatgcccctgttgaaggagatggaatgtcattgccattttctga 14393223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 538
Target Start/End: Complemental strand, 13857681 - 13857634
Alignment:
Q  491 gttatatgtatgtcattcttcataaacaagcctaatgtagtgattttg 538  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  13857681 gttatatgtatgtcattcttcataaacaagcctaatgtcgtgattttg 13857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 13882256 - 13882112
Alignment:
Q  96 ggggaagaaatttgtggtgaagccagagaagaaaattatatggaa----atgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaa 191  Q
    ||||||||| |||||||||||||||||| |||||| || |||||     ||||||||||||  |||||||||||| |||||||  |||||||  |||||     
T  13882256 ggggaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaagggga-agaaagtcctcagaggtcattggaggacagcgaaaat 13882158  T
Q  192 ggttctgaaaatgtttatgtttctggaatcgaatctaatgatggtg 237  Q
      ||||| ||||| | |||||||||||| | |||||| ||||||||    
T  13882157 acttctgcaaatgctgatgtttctggaagcaaatctattgatggtg 13882112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16024891 - 16024844
Alignment:
Q  34 aatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaat 81  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  16024891 aatccacagttcaaaagcgaaagagaagagggtgagttatctccaaat 16024844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 14392837 - 14392914
Alignment:
Q  18 ataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataactttgcag 95  Q
    |||||||||| | ||||||| ||||||||||||| ||||||||||||| | || ||||||||||  |||| |||||||    
T  14392837 ataccaagaagaatcaaatcgatagttcaaaagcaaaagagaagagggagagtcatctccaaatccataattttgcag 14392914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 13884008 - 13883931
Alignment:
Q  150 ggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggttctgaaaatgtttatgtttctggaatcgaatct 227  Q
    |||| ||| |||||||| |||||||| ||||| | | |||| | ||||||||||||| |||||||||||| |||||||    
T  13884008 ggggaagagagtcctcagaggtcatcggaggatagttaaaatgcttctgaaaatgttgatgtttctggaagcgaatct 13883931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 40165857 - 40165906
Alignment:
Q  31 tcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaa 80  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||||||||||    
T  40165857 tcaaatcgacagttcaaaagcgaaaaagaagagggtgagttatctccaaa 40165906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 13866196 - 13866153
Alignment:
Q  495 tatgtatgtcattcttcataaacaagcctaatgtagtgattttg 538  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  13866196 tatgtatgtcattcttcataaacaggcccaatgtcgtgattttg 13866153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 13871929 - 13871875
Alignment:
Q  18 ataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgtta 72  Q
    |||||||||||  ||||||| | |||||||||| |||||||||||||||| ||||    
T  13871929 ataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagtta 13871875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 538
Target Start/End: Complemental strand, 14358637 - 14358599
Alignment:
Q  500 atgtcattcttcataaacaagcctaatgtagtgattttg 538  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  14358637 atgtcattcttcataaacaagcctaatgttgtgcttttg 14358599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 16024373 - 16024335
Alignment:
Q  416 ctccttttatgtgctgattagacttcagcaggtacaaaa 454  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  16024373 ctccttctatgtgctgattagacttcatcaggtacaaaa 16024335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 13882409 - 13882352
Alignment:
Q  18 ataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatct 75  Q
    |||||||||| | ||||||| | ||||||||||| ||||||||||||| | |||||||    
T  13882409 ataccaagaagaatcaaatcaacagttcaaaagccaaagagaagagggagagttatct 13882352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 14389943 - 14389980
Alignment:
Q  509 ttcataaacaagcctaatgtagtgattttgtacatatt 546  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  14389943 ttcataaacaagcctaatgttgtgattttgcacatatt 14389980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Complemental strand, 16021945 - 16021913
Alignment:
Q  496 atgtatgtcattcttcataaacaagcctaatgt 528  Q
    |||||||||||||||||| ||||||||||||||    
T  16021945 atgtatgtcattcttcattaacaagcctaatgt 16021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 29625420 - 29625322
Alignment:
Q  158 aagtcctcataggtcatccgaggacaatgaaaaaggttctgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaaga 256  Q
    |||||||||||| ||||| || |||| |||||| |  ||||| |||| | |||||||||| | ||| |||  |||||||||||| ||||||||||||||    
T  29625420 aagtcctcatagatcatcagacgacagtgaaaatgcatctgagaatggtgatgtttctggtaccgagtctgctgatggtgaggaatgttctcgagaaga 29625322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 26202218 - 26202120
Alignment:
Q  158 aagtcctcataggtcatccgaggacaatgaaaaaggttctgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaaga 256  Q
    |||||||||||| ||||| || |||| |||||| |  ||||| |||| | |||||||||| |  || |||  |||||||||||| ||||||||||||||    
T  26202218 aagtcctcatagatcatcagacgacagtgaaaatgcatctgagaatggtgatgtttctggtactgagtctgctgatggtgaggaatgttctcgagaaga 26202120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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