View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18977_high_4 (Length: 403)

Name: NF18977_high_4
Description: NF18977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18977_high_4
NF18977_high_4
[»] chr5 (2 HSPs)
chr5 (1-341)||(3003749-3004089)
chr5 (355-403)||(3004073-3004121)
[»] chr6 (2 HSPs)
chr6 (180-341)||(4160226-4160387)
chr6 (355-403)||(4160194-4160242)
[»] chr4 (2 HSPs)
chr4 (172-341)||(54653978-54654146)
chr4 (355-394)||(54654130-54654169)
[»] chr7 (2 HSPs)
chr7 (172-341)||(24760721-24760888)
chr7 (355-403)||(24760872-24760920)
[»] chr3 (2 HSPs)
chr3 (172-341)||(52128156-52128323)
chr3 (355-403)||(52128307-52128355)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 3003749 - 3004089
Alignment:
Q  1 agctaatccaaacacatactacatcttgccgactactaatatctctaataattatnnnnnnnnnnnnnnnnnnncattctggtaattaagagttcatatg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||                   ||||||| ||||||||||||||||||    
T  3003749 agctaatccaaacacatactacatcttaccgactactaatatctctaataattataaaaataaaaaataaaaaacattctgataattaagagttcatatg 3003848  T
Q  101 tgatataactaaagttttgtttaaacacatactattaccgattaaaagtataccagaaggctacacattccaaaatttatgtactaacatattatatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003849 tgatataactaaagttttgtttaaacacatactattaccgattaaaagtataccagaaggctacacattccaaaatttatgtactaacatattatatatt 3003948  T
Q  201 ctctcgataacaatgagaacttgagggattcttagttctgccatttttactttttaaaatccattagactaataactctatctaaaatttttgtgatgtt 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003949 ctctcaataacaatgagaacttgagggattcttagttctgccatttttactttttaaaatccattagactaataactctatctaaaatttttgtgatgtt 3004048  T
Q  301 tctttcaaatctaaaattgtgtatatgtgtaaagatatgtt 341  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  3004049 tctttcaaatctaaaattgtgtttatgtgtaaagatatgtt 3004089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 3004073 - 3004121
Alignment:
Q  355 atgtgtaaagatatgttgggatgcatagtatttaatttggtagcatttg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004073 atgtgtaaagatatgttgggatgcatagtatttaatttggtagcatttg 3004121  T

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Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 180 - 341
Target Start/End: Complemental strand, 4160387 - 4160226
Alignment:
Q  180 tgtactaacatattatatattctctcgataacaatgagaacttgagggattcttagttctgccatttttactttttaaaatccattagactaataactct 279  Q
    |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  4160387 tgtactaacatattgtatattctctcaatgacaatgagaacttgagggattcttagttctaccattcttactttttaaaatccattagactaataactct 4160288  T
Q  280 atctaaaatttttgtgatgtttctttcaaatctaaaattgtgtatatgtgtaaagatatgtt 341  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  4160287 atctaaattttttttgatgtttctttcaaatctaaaattgtgtatatgtgtataggtatgtt 4160226  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 4160242 - 4160194
Alignment:
Q  355 atgtgtaaagatatgttgggatgcatagtatttaatttggtagcatttg 403  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  4160242 atgtgtataggtatgttgggatgcatagtatttaatttggtagcatttg 4160194  T

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Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 54653978 - 54654146
Alignment:
Q  172 aaaatttatgtactaacatattatatattctctcgataacaatgagaacttgagggattcttagttctgcca-tttttactttttaaaatccattagact 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||  ||||| ||||||||||||||    
T  54653978 aaaatttatgtactaacatattatatattctctcgataacaatgagaacttgagggatttttagttctgacattttttttttttttaaatccattagact 54654077  T
Q  271 aataactctatctaaaatttttgtgatgtttctttcaaatctaaaattgtgtatatgtgtaaagatatgtt 341  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  54654078 aataactctatctaaaaattttgtgatgtttctttcaaatctaaaattgtg--tatgtgtaaaggtatgtt 54654146  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 54654130 - 54654169
Alignment:
Q  355 atgtgtaaagatatgttgggatgcatagtatttaatttgg 394  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  54654130 atgtgtaaaggtatgttgggatgcatagtatttaatttgg 54654169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 24760721 - 24760888
Alignment:
Q  172 aaaatttatgtactaacatattatatattctctcgataacaatgagaacttgagggattcttagttctgccatttttactttttaaaatccattagacta 271  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  24760721 aaaatttttgtactaacatattatatattctctcaataacaatgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagacta 24760820  T
Q  272 ataactctatctaaaatttttgtgatgtttctttcaaatctaaaattgtgtatatgtgtaaagatatgtt 341  Q
    ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  24760821 ataa--ttatctaaaatttttgtgatgtttctttcaaatctaaaattgtgtatatgtgtataggtatgtt 24760888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 24760872 - 24760920
Alignment:
Q  355 atgtgtaaagatatgttgggatgcatagtatttaatttggtagcatttg 403  Q
    ||||||| || |||||||||||||||| |||||||||||||||||||||    
T  24760872 atgtgtataggtatgttgggatgcatattatttaatttggtagcatttg 24760920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 52128156 - 52128323
Alignment:
Q  172 aaaatttatgtactaacatattatatattctctcgataacaatgagaacttgagggattcttagttctgccatttttactttttaaaatccattagacta 271  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  52128156 aaaatttttgtactaacatattatatattctctcaataacaatgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagacta 52128255  T
Q  272 ataactctatctaaaatttttgtgatgtttctttcaaatctaaaattgtgtatatgtgtaaagatatgtt 341  Q
    ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  52128256 ataa--ttatctaaaatttttgtgatgtttctttcaaatctaaaattgtgtatatgtgtataggtatgtt 52128323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 52128307 - 52128355
Alignment:
Q  355 atgtgtaaagatatgttgggatgcatagtatttaatttggtagcatttg 403  Q
    ||||||| || |||||||||||||||| |||||||||||||||||||||    
T  52128307 atgtgtataggtatgttgggatgcatattatttaatttggtagcatttg 52128355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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