View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18977_low_2 (Length: 599)

Name: NF18977_low_2
Description: NF18977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18977_low_2
NF18977_low_2
[»] chr3 (10 HSPs)
chr3 (4-320)||(49161867-49162183)
chr3 (4-322)||(53268518-53268836)
chr3 (4-273)||(31167749-31168015)
chr3 (188-312)||(53269304-53269426)
chr3 (188-312)||(49164608-49164730)
chr3 (206-262)||(31168496-31168552)
chr3 (269-320)||(31165031-31165082)
chr3 (277-322)||(38279407-38279452)
chr3 (277-322)||(44868661-44868706)
chr3 (277-321)||(55281834-55281878)
[»] scaffold0024 (2 HSPs)
scaffold0024 (321-570)||(43006-43267)
scaffold0024 (382-563)||(33710-33892)
[»] chr7 (11 HSPs)
chr7 (357-563)||(3340206-3340412)
chr7 (4-309)||(23633726-23634048)
chr7 (162-309)||(12923952-12924099)
chr7 (17-107)||(39147613-39147702)
chr7 (515-563)||(3346135-3346183)
chr7 (515-563)||(3344135-3344183)
chr7 (116-154)||(39147727-39147765)
chr7 (180-302)||(39147785-39147907)
chr7 (277-321)||(19816263-19816307)
chr7 (277-321)||(34853390-34853434)
chr7 (277-321)||(42456559-42456603)
[»] chr6 (2 HSPs)
chr6 (323-547)||(2985845-2986058)
chr6 (504-563)||(2936701-2936760)
[»] chr1 (6 HSPs)
chr1 (192-309)||(1618956-1619073)
chr1 (202-302)||(48582333-48582433)
chr1 (109-168)||(48583089-48583148)
chr1 (134-309)||(1619727-1619906)
chr1 (109-151)||(1619685-1619727)
chr1 (280-321)||(48620369-48620410)
[»] chr4 (6 HSPs)
chr4 (188-262)||(36571802-36571876)
chr4 (277-320)||(52869447-52869490)
chr4 (277-321)||(198998-199042)
chr4 (277-321)||(3221430-3221474)
chr4 (277-321)||(20075524-20075568)
chr4 (277-321)||(36111259-36111303)
[»] chr5 (2 HSPs)
chr5 (17-107)||(6901016-6901105)
chr5 (116-262)||(6900568-6900716)
[»] chr2 (3 HSPs)
chr2 (202-293)||(6609410-6609501)
chr2 (277-321)||(6849287-6849331)
chr2 (277-321)||(16887582-16887626)
[»] chr8 (3 HSPs)
chr8 (280-320)||(39852849-39852889)
chr8 (277-321)||(43591006-43591050)
chr8 (277-321)||(44061984-44062028)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 49162183 - 49161867
Alignment:
Q  4 gagtgagatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattg 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49162183 gagtgaaatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgagtttaaattagaagccattg 49162084  T
Q  104 gtaaatgttatggtgatagtgaggtcggtggtggtggtgggtgagttgctgcaagtgttgggtgagagagaggagggagaatggttggagaagatatcgt 203  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  49162083 gtaaatgttatggtgatagtgaggttggtggtggtggtgcgtgagttgctgcaagtgttgggtgagagagtggagggagaatggttggagaagatattgt 49161984  T
Q  204 gaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaaggattcccctttc 303  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49161983 gaaaaaatatagtgttgagggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaaggattctcctttc 49161884  T
Q  304 tcatgtgaacacacacc 320  Q
     ||||||||||||||||    
T  49161883 ccatgtgaacacacacc 49161867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 53268836 - 53268518
Alignment:
Q  4 gagtgagatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattg 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53268836 gagtgaaatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattg 53268737  T
Q  104 gtaaatgttatggtgatagtgaggtcggtggtggtggtgggtgagttgctgcaagtgttgggtgagagagaggagggagaatggttggagaagatatcgt 203  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||    
T  53268736 gtaaatgttatggtgatagtgaggttggtggtggtggtgggtgagttgctgcaagtgttgggtgagagagaggaggtagaatggttgaagaagatattgt 53268637  T
Q  204 gaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaaggattcccctttc 303  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||    
T  53268636 gaaaaaatatagtgttgagggaacatattaatatcgtggtcttcttttgatcaaatgatgaacatctaagtgatccatggtaggaaaagattctcctttc 53268537  T
Q  304 tcatgtgaacacacacctg 322  Q
     ||||||||||||||||||    
T  53268536 ccatgtgaacacacacctg 53268518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 31168015 - 31167749
Alignment:
Q  4 gagtgagatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattg 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31168015 gagtgaaatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattg 31167916  T
Q  104 gtaaatgttatggtgatagtgaggtcggtggtggtggtgggtgagttgctgcaagtgttgggtgagagagaggagggagaatggttggagaagatatcgt 203  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  31167915 gtaaatgttatggtgatagtgaggttggtggtggtggtgggtgagt---tgcaagtgttgggtgagagagaggaggtagaatggttggagaagatattgt 31167819  T
Q  204 gaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaag 273  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31167818 gaaaaaatatagtgttgagggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaag 31167749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 53269304 - 53269426
Alignment:
Q  188 ttggagaagatatcgtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtagg 287  Q
    |||| |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||  ||||||||||||||| || || ||||||  ||||||| ||    
T  53269304 ttggggaagatattgtgaaaa-atatagtgttcaaggaacatgataatattgtggtctcattttgatcaaatggtaaaaat-taagtgttccatggtggg 53269401  T
Q  288 aaaggattcccctttctcatgtgaa 312  Q
    ||||||||  |||||| ||||||||    
T  53269402 aaaggattaacctttcccatgtgaa 53269426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 49164608 - 49164730
Alignment:
Q  188 ttggagaagatatcgtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtagg 287  Q
    |||| |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||  ||||||||||||||| || || |||||| ||||| ||       
T  49164608 ttggggaagatattgtgaaaa-atatagtgttcaaggaacatgataatattgtggtctcattttgatcaaatggtaaaaat-taagtgtcccatagtgaa 49164705  T
Q  288 aaaggattcccctttctcatgtgaa 312  Q
    ||||||||  |||||| ||||||||    
T  49164706 aaaggattaacctttcccatgtgaa 49164730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 31168496 - 31168552
Alignment:
Q  206 aaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggt 262  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||    
T  31168496 aaaaatatagtgttcaaggaacatgataatattgtggtcttattttgattaaatggt 31168552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 31165082 - 31165031
Alignment:
Q  269 ctaagtgacccatggtaggaaaggattcccctttctcatgtgaacacacacc 320  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  31165082 ctaagtgatccatggtaggaaaggattctcctttcccatgtgaacacacacc 31165031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 38279452 - 38279407
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacctg 322  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||    
T  38279452 cccatggtgggaaaggattcacctttcccatgtgaacacacacctg 38279407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 44868661 - 44868706
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacctg 322  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||||    
T  44868661 cccatggtgggaaaggattaacctttcccatgtgaacacacacctg 44868706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 55281878 - 55281834
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  55281878 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 55281834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 321 - 570
Target Start/End: Complemental strand, 43267 - 43006
Alignment:
Q  321 tgaaaaagaagaggaacatcaataaaataaga------------agagtaaatggtgaattgatcaaccggtcacatcaataaaatgttgaaggctgaag 408  Q
    ||||||||||||||||||||||||||||||||             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43267 tgaaaaagaagaggaacatcaataaaataagagactgcaacacttgagtaaatggtgaattgatcaacaggtcacatcaataaaatgttgaaggctgaag 43168  T
Q  409 cgcttttctttggacgcaaaagctacccatattagctccaaccttaaattgattttggaacaacaatcaaataaaattattaagatccccaaacaagttg 508  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  43167 cgcttttctttggacgcataagctacccatattagctccaaccttaaattgattttggaacaacaatcacataaaattattaagagccccaaacaagttg 43068  T
Q  509 aattatttagtacataactctcgtttgaccatgtgaactcacaaccaaacaagcatgacatt 570  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43067 atttatttagtacataactctcgtttgaccatgtgaactcacaaccaaacaagcatgacatt 43006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 382 - 563
Target Start/End: Complemental strand, 33892 - 33710
Alignment:
Q  382 acatcaataaaatgttgaaggctgaagcgcttttctttggacgcaaaagctacccatattagctccaaccttaaattgattttggaacaacaatcaaata 481  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||    
T  33892 acatcaataaaatgttgaaggctgaagcgtttttctttggacacaaaatctacccatattagctccaaccttaaatcgattttggaacaacaatcacgta 33793  T
Q  482 aaattattaagatc-cccaaacaagttgaattatttagtacataactctcgtttgaccatgtgaactcacaaccaaacaagca 563  Q
    |||| || |||| |  ||||||||||||| ||||| |||||||||||| ||||| || ||||| |||||||||||||| ||||    
T  33792 aaatgataaagagcatccaaacaagttgatttattaagtacataactcacgttttactatgtgtactcacaaccaaactagca 33710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 357 - 563
Target Start/End: Original strand, 3340206 - 3340412
Alignment:
Q  357 taaatggtgaattgatcaaccggtcacatcaataaaatgttgaaggctgaagcgcttttctttggacgcaaaagctacccatattagctccaaccttaaa 456  Q
    |||||| | ||||||| | | |||| |||||||||| |||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  3340206 taaatgataaattgattaccaggtcgcatcaataaattgtttaaggctgaagtgcttttccttggacgcaaaagctacc-atattagctccaaccttaaa 3340304  T
Q  457 ttgattttggaacaacaatcaaataaaattattaaga-tccccaaacaagttgaattatttagtacataactctcgtttgaccatgtgaactcacaacca 555  Q
    | ||||||||| | |||| ||  ||||| |||||||| |  ||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  3340305 tcgattttggagcgacaaccacgtaaaactattaagagtgaccaaataagttgatttatttagtacataactcacgtttgatcatgtgaactcacaacca 3340404  T
Q  556 aacaagca 563  Q
    ||||||||    
T  3340405 aacaagca 3340412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 23633726 - 23634048
Alignment:
Q  4 gagtgagatgaaattgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattg 103  Q
    |||||| ||| | |||||||| ||||| ||| ||| ||||||||| |||||||||||||||||||| ||||||||||||  ||| ||| |||||||||||    
T  23633726 gagtgaaatgtagttgttataagttttatgacttgaatatttgagtttgatgatgattaatgtttacatttattttttgattttcaat-agaagccattg 23633824  T
Q  104 gtaaatg-----------ttatg-----gtgatagtgaggtcggtggtggtggtgggtgagttgctgcaagtgt-----tgggtgagagagaggagggag 182  Q
    |||| ||           || ||     |||||||||||||   |||||||||||| ||||||| |||||  ||     ||||||||||||| ||| |||    
T  23633825 gtaagtgactaagtgttattgtgaatatgtgatagtgaggt---tggtggtggtggatgagttgttgcaatggtaatggtgggtgagagagatgagagag 23633921  T
Q  183 aatggttggagaagatatcgtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatg 282  Q
    ||||||||| ||||||   ||||||||||||| || |||  |||||   ||||||| ||||||||| ||||||||||||| || ||| || |||||||||    
T  23633922 aatggttggggaagatgatgtgaaaaaatataatgctgagagaacacaataatattatggtcttctattgatcaaatggtaaaaatccaattgacccatg 23634021  T
Q  283 gtaggaaaggattcccctttctcatgt 309  Q
    || | |||||||| ||||||| |||||    
T  23634022 gtggaaaaggattgccctttcccatgt 23634048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 309
Target Start/End: Complemental strand, 12924099 - 12923952
Alignment:
Q  162 tgggtgagagagaggagggagaatggttggagaagatatcgtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatgg 261  Q
    ||||| ||||||||||| ||||||||||||  |||||   ||||||||||||| || | |  |||||   ||||||| ||||||||| ||||||||||||    
T  12924099 tgggtaagagagaggagagagaatggttgggaaagatgatgtgaaaaaatataatgctcagagaacacaataatattatggtcttctattgatcaaatgg 12924000  T
Q  262 tgaacatctaagtgacccatggtaggaaaggattcccctttctcatgt 309  Q
    | || | | || ||||||||||| |||||||||| ||||||| |||||    
T  12923999 taaaaacccaattgacccatggtgggaaaggattgccctttcccatgt 12923952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 39147613 - 39147702
Alignment:
Q  17 ttgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattggtaa 107  Q
    |||||||| ||||| ||| ||| ||||||||| |||||||||||||||||||| ||||||||||||  ||| || ||||||||||||||||    
T  39147613 ttgttataagttttatgacttgaatatttgagtttgatgatgattaatgtttacatttattttttgattttcaa-tagaagccattggtaa 39147702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 3346135 - 3346183
Alignment:
Q  515 ttagtacataactctcgtttgaccatgtgaactcacaaccaaacaagca 563  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  3346135 ttagtgcataactcacgttttaccatgtgaactcacaaccaaacaagca 3346183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 3344135 - 3344183
Alignment:
Q  515 ttagtacataactctcgtttgaccatgtgaactcacaaccaaacaagca 563  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||||||||||    
T  3344135 ttagtgcataactcacgttttaccatgtcaactcacaaccaaacaagca 3344183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 39147727 - 39147765
Alignment:
Q  116 gtgatagtgaggtcggtggtggtggtgggtgagttgctg 154  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  39147727 gtgatagtgaggttggtggtggtggtggatgagttgctg 39147765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 39147785 - 39147907
Alignment:
Q  180 gagaatggttggagaagatatcgtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgaccc 279  Q
    |||||||||||| ||||||   ||||||||||||| || |||  |||||   ||||||| | ||||| | ||||||||||||| || | | || ||||||    
T  39147785 gagaatggttggggaagatgatgtgaaaaaatataatgatgagagaacacaataatattatagtcttttattgatcaaatggtaaaaacccaattgaccc 39147884  T
Q  280 atggtaggaaaggattccccttt 302  Q
    ||||| ||||| |||| ||||||    
T  39147885 atggtgggaaatgattgcccttt 39147907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 19816307 - 19816263
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  19816307 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 19816263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 34853434 - 34853390
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  34853434 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 34853390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 42456559 - 42456603
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  42456559 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 42456603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 323 - 547
Target Start/End: Original strand, 2985845 - 2986058
Alignment:
Q  323 aaaaagaagaggaacatcaataaaataagaagagtaaatggtgaattgatcaaccggtcacatcaataaaatgttgaaggctgaagcgcttttctttgga 422  Q
    ||||||||||||| ||||||| |||||||| ||||||||||| | |||||   | | |||||||| |||||||||||||       || |||||||||||    
T  2985845 aaaaagaagaggagcatcaatcaaataaga-gagtaaatggtaagttgattgtcggatcacatcattaaaatgttgaag-------cgattttctttgga 2985936  T
Q  423 cgcaaaagctacccatattagctccaaccttaaattgattttggaacaacaatcaaataaaattattaaga-tccccaaacaagttgaattatttagtac 521  Q
    ||||||||||||||||||| |||||||||||||||  | |||||||||||||||| ||||||||| | ||| ||||||||||| |||    |||||| ||    
T  2985937 cgcaaaagctacccatatttgctccaaccttaaatccagtttggaacaacaatcacataaaattagttagagtccccaaacaatttg----atttagaac 2986032  T
Q  522 ataactctcgtttgaccatgtgaact 547  Q
    ||||||||||||||||| | ||||||    
T  2986033 ataactctcgtttgaccctatgaact 2986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 2936701 - 2936760
Alignment:
Q  504 agttgaattatttagtacataactctcgtttgaccatgtgaactcacaaccaaacaagca 563  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||| || ||||||||||||    
T  2936701 agttgatttatttagtacataattcatgtttgaccatgtgaacttacgaccaaacaagca 2936760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 1619073 - 1618956
Alignment:
Q  192 agaagatatcgtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaag 291  Q
    |||||| || |||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||| || | | || ||||||||||| ||||||    
T  1619073 agaagaaattgtgaaaaaatatagtgttgagggaacatgataatatcatggtcttcttttgatcaaatggtaaaaagccaattgacccatggtgggaaag 1618974  T
Q  292 gattcccctttctcatgt 309  Q
    || | ||||||| |||||    
T  1618973 gaataccctttcccatgt 1618956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 48582433 - 48582333
Alignment:
Q  202 gtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaaggattcccctt 301  Q
    |||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||| || | | || ||||||||||| |||||||| | |||||    
T  48582433 gtgaaaaaatatagtgttgagggaacatgataatatcatggtcttcttttgatcaaatggtaaaaagccaattgacccatggtgggaaaggaataccctt 48582334  T
Q  302 t 302  Q
    |    
T  48582333 t 48582333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 48583089 - 48583148
Alignment:
Q  109 tgttatggtgatagtgaggtcggtggtggtggtgggtgagttgctgcaagtgttgggtga 168  Q
    |||||| |||||||| |||| |||||||||||||| |||||||||||||||| |||||||    
T  48583089 tgttattgtgatagtaaggttggtggtggtggtggatgagttgctgcaagtggtgggtga 48583148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 309
Target Start/End: Original strand, 1619727 - 1619906
Alignment:
Q  134 gtggtggtgggtgagttgctgcaagtgttgggtgagagaga--ggagggagaatggttggagaagatatcgtg--aaaaaatatagtgttgaaggaacat 229  Q
    |||||||||| |||||||||||||||| ||||||||||| |   ||| |||||||||||| ||||||   |||  |||||||||| || |||  || ||     
T  1619727 gtggtggtggatgagttgctgcaagtggtgggtgagagaaaccagagtgagaatggttggggaagatggtgtggaaaaaaatataatgctgagagagcac 1619826  T
Q  230 gttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaaggattcccctttctcatgt 309  Q
      ||||||  ||||||| ||||||||||||||| || |   || ||||||||||| |||||||| | ||||||| |||||    
T  1619827 agtaatatcatggtctttttttgatcaaatggtaaaaagtcaattgacccatggtgggaaaggaataccctttcccatgt 1619906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 1619685 - 1619727
Alignment:
Q  109 tgttatggtgatagtgaggtcggtggtggtggtgggtgagttg 151  Q
    |||||| ||||||||||||| |||||||||||||| |||||||    
T  1619685 tgttattgtgatagtgaggttggtggtggtggtggatgagttg 1619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 48620369 - 48620410
Alignment:
Q  280 atggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  48620369 atggtgggaaaggattcacctttcccatgtgaacacacacct 48620410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 36571876 - 36571802
Alignment:
Q  188 ttggagaagatatcgtgaaaaaat-atagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggt 262  Q
    |||||||| |||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  36571876 ttggagaaaatattgtgaaaaaattataatgttgaag-aacatgttaatattgtggtcttcttttgatcaaatggt 36571802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 52869490 - 52869447
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacc 320  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||    
T  52869490 cccatggtgggaaaggattcacctttcccatgtgaacacacacc 52869447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 199042 - 198998
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  199042 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 198998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 3221430 - 3221474
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    ||||| || ||||||||||| |||||| |||||||||||||||||    
T  3221430 cccatcgtgggaaaggattcacctttcccatgtgaacacacacct 3221474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 20075568 - 20075524
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  20075568 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 20075524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 36111259 - 36111303
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  36111259 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 36111303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 6901105 - 6901016
Alignment:
Q  17 ttgttataggttttctgatttggatatttgagcttgatgatgattaatgtttatatttattttttgggtttaaattagaagccattggtaa 107  Q
    |||||||| ||||| ||| ||| ||||||||| |||||||||||||||||||| ||||||||||||  ||| || ||||||||||||||||    
T  6901105 ttgttataagttttatgacttgaatatttgagtttgatgatgattaatgtttacatttattttttgattttcaa-tagaagccattggtaa 6901016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 262
Target Start/End: Complemental strand, 6900716 - 6900568
Alignment:
Q  116 gtgatagtgaggtcggtggtggtggtgggtgagttgctgcaagtgt-----tgggtgagagagaggagggagaatggttggagaagatatcgtgaaaaaa 210  Q
    |||||||||||||   |||||||||||| |||||||||||||  ||     ||||||||||||||||| |||||||||||| ||||||   |||||||||    
T  6900716 gtgatagtgaggt---tggtggtggtggatgagttgctgcaatggtaatggtgggtgagagagaggagagagaatggttggggaagatgatgtgaaaaaa 6900620  T
Q  211 tatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggt 262  Q
    |||| |  |||  | |||   ||||||| |||||||||||| ||||||||||    
T  6900619 tataattatgagaggacacaataatattatggtcttcttttaatcaaatggt 6900568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 6609410 - 6609501
Alignment:
Q  202 gtgaaaaaatatagtgttgaaggaacatgttaatattgtggtcttcttttgatcaaatggtgaacatctaagtgacccatggtaggaaagga 293  Q
    |||||||  ||||||||||| |||||||| ||||||  ||||||||||||||||||||||| || | | || ||||||||||| ||||||||    
T  6609410 gtgaaaatttatagtgttgagggaacatgataatatcatggtcttcttttgatcaaatggtaaaaagccaattgacccatggtgggaaagga 6609501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 6849331 - 6849287
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  6849331 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 6849287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 16887626 - 16887582
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  16887626 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 16887582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 39852849 - 39852889
Alignment:
Q  280 atggtaggaaaggattcccctttctcatgtgaacacacacc 320  Q
    ||||| ||||||||||  |||||||||||||||||||||||    
T  39852849 atggtgggaaaggattaacctttctcatgtgaacacacacc 39852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 43591050 - 43591006
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  43591050 cccatggtgggaaaggattaacctttcccatgtgaacacacacct 43591006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 44062028 - 44061984
Alignment:
Q  277 cccatggtaggaaaggattcccctttctcatgtgaacacacacct 321  Q
    |||||||| |||||| |||  ||||||||||||||||||||||||    
T  44062028 cccatggttggaaagtattaacctttctcatgtgaacacacacct 44061984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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