View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18977_low_7 (Length: 282)

Name: NF18977_low_7
Description: NF18977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18977_low_7
NF18977_low_7
[»] chr1 (4 HSPs)
chr1 (1-282)||(45131009-45131290)
chr1 (21-279)||(45114111-45114363)
chr1 (231-279)||(45122556-45122604)
chr1 (39-67)||(45131291-45131319)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 45131290 - 45131009
Alignment:
Q  1 atggcctaataatgaaaaagacattaattcatgtacaagcacacatgtgcaattgcacttcttcacattacctaattataatatagaagaatcaacacgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45131290 atggcctaataatgaaaaagacattaattcatgtacaagcacacatgtgcaattgcacttcttcacattgcctaattataatatagaagaatcaacacgt 45131191  T
Q  101 acattttagagatggtagaaggcatatatatacgacatgtacattgatgcaacattgtaggtcaccaattaaaactgatggactcaaagtgaagattatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45131190 acattttagagatggtagaaggcatatatatacgacatgtacattgatgcaacattgtaggtcaccaattaaaactgatggactcaaagtgaagattatc 45131091  T
Q  201 agccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttggaccacaaaccataactccaacatctttgtct 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45131090 agccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttggaccacaaaccataactccaacatctttgtct 45131009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 45114363 - 45114111
Alignment:
Q  21 acattaattcatgtacaagcacacatgtgcaattgcacttcttcac-attacctaattataata---tagaagaatcaacacgtacattttagag-atgg 115  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||| ||| |||||||||||||   |||| ||||||||| | || |||||||| || |    
T  45114363 acattaattcatgtacaggcacacttgtgcaattgcacttgttcacgattgcctaattataataacatagaggaatcaacatgaacgttttagaggatag 45114264  T
Q  116 tagaaggcatatatatacgacatgtacattgatgcaacattgtaggtcaccaattaaaactgatggactcaaagtgaagattatcagccaaaccagaagc 215  Q
    || ||||||||||||| ||||||||||||||           ||| |||||||||||| ||||| || || |||||||||||||||||||||||||||||    
T  45114263 taaaaggcatatatatgcgacatgtacattg-----------tagatcaccaattaaagctgattgattcgaagtgaagattatcagccaaaccagaagc 45114175  T
Q  216 acaaattttagcaacttcatgtctcaattttcttggaccacaaaccataactccaacatctttg 279  Q
    ||| ||| |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  45114174 acatattctagcaacttcatgtctcatttttcttggaccacaagtcataactccaacatctttg 45114111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 45122604 - 45122556
Alignment:
Q  231 ttcatgtctcaattttcttggaccacaaaccataactccaacatctttg 279  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  45122604 ttcatgtctcaattatcttggacaacaaaccataacttcaacatctttg 45122556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 45131319 - 45131291
Alignment:
Q  39 gcacacatgtgcaattgcacttcttcaca 67  Q
    |||||||||||||||||||||||||||||    
T  45131319 gcacacatgtgcaattgcacttcttcaca 45131291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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