View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18977_low_9 (Length: 250)
Name: NF18977_low_9
Description: NF18977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18977_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 13447188 - 13447103
Alignment:
| Q |
161 |
actcaggccaatcaattttcgcttttcgtgtagtccacaaagagttgtaggattacatagttcacattgaaaaatttgttctcgac |
246 |
Q |
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| T |
13447188 |
actcacgccaatcaattttcgctgttcatgtagtccacaaagagttgtaggattacatagttcacattgaaaaatttgttctcgac |
13447103 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 13447326 - 13447268
Alignment:
| Q |
12 |
atgaatttgaagtgttacaatttgttttatgctattattagattatatattggatgcat |
70 |
Q |
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| T |
13447326 |
atgaatttgaagtgttacaatttgttttatgctattattagattatatattggatgcat |
13447268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 13453756 - 13453707
Alignment:
| Q |
12 |
atgaatttgaagtgttacaatttgttttatgctattattagattatatat |
61 |
Q |
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| T |
13453756 |
atgaatttgaagtcttacgatttgttctatgttattattagattatatat |
13453707 |
T |
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