View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18978_high_17 (Length: 244)

Name: NF18978_high_17
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18978_high_17
NF18978_high_17
[»] chr1 (40 HSPs)
chr1 (17-244)||(46543219-46543443)
chr1 (129-244)||(50328027-50328142)
chr1 (130-244)||(32914959-32915073)
chr1 (130-244)||(40316831-40316945)
chr1 (127-244)||(50781454-50781571)
chr1 (131-244)||(52362552-52362665)
chr1 (130-244)||(36577299-36577413)
chr1 (131-244)||(13489732-13489845)
chr1 (131-244)||(15704950-15705063)
chr1 (131-244)||(48326038-48326150)
chr1 (140-244)||(52714798-52714902)
chr1 (202-244)||(3226019-3226061)
chr1 (131-244)||(8447806-8447919)
chr1 (131-244)||(10889934-10890047)
chr1 (131-244)||(35136914-35137027)
chr1 (130-188)||(50881997-50882055)
chr1 (140-186)||(51571243-51571289)
chr1 (140-244)||(15015468-15015571)
chr1 (202-244)||(29147833-29147875)
chr1 (131-244)||(34254239-34254352)
chr1 (130-187)||(29154905-29154962)
chr1 (140-244)||(33358055-33358159)
chr1 (203-244)||(51466837-51466878)
chr1 (140-187)||(7101584-7101631)
chr1 (201-244)||(11597707-11597750)
chr1 (126-165)||(19969457-19969496)
chr1 (214-244)||(8411689-8411719)
chr1 (210-244)||(19969529-19969563)
chr1 (209-243)||(29418757-29418791)
chr1 (213-243)||(30745058-30745088)
chr1 (213-243)||(30766509-30766539)
chr1 (203-244)||(4608222-4608263)
chr1 (203-244)||(35539233-35539274)
chr1 (203-244)||(44723431-44723472)
chr1 (203-244)||(45417842-45417883)
chr1 (131-187)||(8200202-8200258)
chr1 (210-242)||(29877370-29877402)
chr1 (141-177)||(34040396-34040432)
chr1 (212-244)||(50824811-50824843)
chr1 (212-244)||(51436740-51436772)
[»] chr5 (31 HSPs)
chr5 (125-244)||(189585-189704)
chr5 (131-244)||(15478728-15478841)
chr5 (131-244)||(32912108-32912221)
chr5 (131-244)||(8675321-8675434)
chr5 (127-244)||(43441808-43441925)
chr5 (130-244)||(10649505-10649619)
chr5 (130-244)||(19481069-19481183)
chr5 (140-244)||(19839883-19839987)
chr5 (131-244)||(34270397-34270510)
chr5 (140-244)||(1839242-1839346)
chr5 (140-244)||(15952942-15953046)
chr5 (130-244)||(41175593-41175707)
chr5 (125-175)||(189516-189566)
chr5 (198-244)||(6517782-6517828)
chr5 (130-239)||(10658991-10659099)
chr5 (140-237)||(15008447-15008544)
chr5 (131-244)||(34124691-34124804)
chr5 (131-244)||(43213947-43214060)
chr5 (203-244)||(6292191-6292232)
chr5 (203-244)||(9581649-9581690)
chr5 (203-244)||(30640860-30640901)
chr5 (203-244)||(34888769-34888810)
chr5 (140-244)||(38704094-38704198)
chr5 (140-187)||(6446415-6446462)
chr5 (213-244)||(21136333-21136364)
chr5 (140-244)||(9226370-9226475)
chr5 (210-244)||(15267854-15267888)
chr5 (140-186)||(21353272-21353318)
chr5 (203-244)||(6446478-6446519)
chr5 (203-244)||(18397125-18397166)
chr5 (203-244)||(43196585-43196626)
[»] chr6 (22 HSPs)
chr6 (130-244)||(35213448-35213562)
chr6 (130-244)||(754325-754439)
chr6 (140-244)||(1369430-1369534)
chr6 (131-244)||(13143270-13143383)
chr6 (128-244)||(18141186-18141302)
chr6 (140-244)||(20822766-20822869)
chr6 (140-244)||(32046768-32046872)
chr6 (130-244)||(32459403-32459517)
chr6 (203-244)||(26832716-26832757)
chr6 (140-244)||(2688961-2689066)
chr6 (140-186)||(31883200-31883246)
chr6 (203-244)||(868912-868953)
chr6 (140-244)||(2943504-2943608)
chr6 (131-187)||(3832590-3832646)
chr6 (213-244)||(17551348-17551379)
chr6 (201-244)||(23628429-23628472)
chr6 (140-182)||(6856060-6856102)
chr6 (130-187)||(6531067-6531124)
chr6 (203-244)||(14699624-14699665)
chr6 (203-244)||(24842437-24842478)
chr6 (203-244)||(28944939-28944980)
chr6 (203-244)||(34037048-34037089)
[»] chr3 (35 HSPs)
chr3 (131-244)||(46852020-46852133)
chr3 (130-244)||(3953362-3953476)
chr3 (129-244)||(21005062-21005177)
chr3 (130-244)||(51465801-51465915)
chr3 (130-244)||(55400069-55400183)
chr3 (130-244)||(24482850-24482964)
chr3 (130-244)||(50206857-50206971)
chr3 (140-244)||(39697119-39697223)
chr3 (140-244)||(46019532-46019636)
chr3 (142-244)||(20080142-20080245)
chr3 (133-244)||(26645096-26645207)
chr3 (131-244)||(46253692-46253803)
chr3 (130-187)||(6999297-6999354)
chr3 (140-183)||(14771493-14771536)
chr3 (140-187)||(21196251-21196298)
chr3 (140-187)||(52937310-52937357)
chr3 (129-187)||(18741243-18741301)
chr3 (131-244)||(24095294-24095407)
chr3 (210-244)||(24645426-24645460)
chr3 (203-244)||(37927165-37927206)
chr3 (204-244)||(28430799-28430839)
chr3 (140-186)||(9719345-9719391)
chr3 (209-243)||(29097520-29097554)
chr3 (210-244)||(30909099-30909133)
chr3 (210-244)||(32186106-32186140)
chr3 (210-244)||(44813414-44813448)
chr3 (131-244)||(49761377-49761490)
chr3 (214-244)||(49983323-49983353)
chr3 (210-244)||(52485543-52485577)
chr3 (203-244)||(8846561-8846602)
chr3 (203-244)||(33795685-33795726)
chr3 (131-187)||(36412250-36412307)
chr3 (203-244)||(50638311-50638352)
chr3 (203-244)||(54694073-54694114)
chr3 (203-243)||(42683898-42683938)
[»] chr7 (34 HSPs)
chr7 (125-244)||(43573425-43573544)
chr7 (127-244)||(28036814-28036931)
chr7 (131-244)||(33180598-33180711)
chr7 (131-244)||(41893985-41894098)
chr7 (123-244)||(44184439-44184560)
chr7 (140-244)||(42555634-42555738)
chr7 (129-244)||(7817706-7817821)
chr7 (129-244)||(12645796-12645911)
chr7 (130-244)||(11352861-11352975)
chr7 (201-244)||(40231664-40231707)
chr7 (140-244)||(10055529-10055633)
chr7 (131-244)||(13729796-13729909)
chr7 (140-244)||(46532572-46532677)
chr7 (140-244)||(3343227-3343331)
chr7 (203-244)||(31844565-31844606)
chr7 (140-244)||(35588788-35588892)
chr7 (203-244)||(43482593-43482634)
chr7 (210-244)||(41399130-41399164)
chr7 (203-244)||(3062400-3062441)
chr7 (210-243)||(4225823-4225856)
chr7 (142-187)||(16980423-16980468)
chr7 (203-244)||(20482597-20482638)
chr7 (203-244)||(25067293-25067334)
chr7 (209-241)||(1504326-1504358)
chr7 (210-242)||(6109938-6109970)
chr7 (121-188)||(34757348-34757416)
chr7 (140-186)||(10700083-10700129)
chr7 (210-244)||(41430118-41430152)
chr7 (140-186)||(49069372-49069418)
chr7 (203-244)||(21559868-21559909)
chr7 (203-244)||(42926209-42926250)
chr7 (203-244)||(46812865-46812906)
chr7 (142-186)||(36533856-36533900)
chr7 (129-165)||(41458745-41458781)
[»] chr2 (45 HSPs)
chr2 (140-244)||(2563774-2563878)
chr2 (130-244)||(6170700-6170814)
chr2 (130-244)||(32869896-32870010)
chr2 (131-244)||(35589275-35589388)
chr2 (130-244)||(6998955-6999069)
chr2 (130-244)||(13765470-13765584)
chr2 (140-244)||(13347711-13347816)
chr2 (130-242)||(24562904-24563016)
chr2 (140-244)||(9377526-9377630)
chr2 (140-244)||(9634333-9634437)
chr2 (140-244)||(39449337-39449441)
chr2 (131-187)||(36643972-36644028)
chr2 (127-244)||(36211944-36212061)
chr2 (130-187)||(23352794-23352851)
chr2 (130-186)||(3012739-3012795)
chr2 (140-187)||(4023247-4023294)
chr2 (140-187)||(7574562-7574609)
chr2 (131-244)||(39213658-39213771)
chr2 (203-244)||(4061922-4061963)
chr2 (203-244)||(7648460-7648501)
chr2 (203-244)||(28245798-28245839)
chr2 (203-244)||(30546330-30546371)
chr2 (140-244)||(37105708-37105812)
chr2 (128-244)||(40936949-40937065)
chr2 (201-244)||(4299281-4299324)
chr2 (209-244)||(11384981-11385016)
chr2 (201-244)||(20911871-20911914)
chr2 (201-244)||(26277165-26277208)
chr2 (140-187)||(36517323-36517370)
chr2 (140-186)||(7258458-7258504)
chr2 (131-244)||(10711794-10711907)
chr2 (202-244)||(14233678-14233720)
chr2 (141-187)||(34119550-34119596)
chr2 (210-244)||(34119619-34119653)
chr2 (210-244)||(39449084-39449118)
chr2 (203-244)||(12498596-12498637)
chr2 (203-244)||(15269931-15269972)
chr2 (203-244)||(18876881-18876922)
chr2 (203-244)||(25881614-25881655)
chr2 (203-244)||(29361090-29361131)
chr2 (203-244)||(42678819-42678860)
chr2 (203-244)||(44711949-44711990)
chr2 (212-244)||(16199681-16199713)
chr2 (204-244)||(38560748-38560788)
chr2 (123-187)||(41586548-41586612)
[»] chr8 (30 HSPs)
chr8 (129-244)||(42569615-42569730)
chr8 (140-244)||(16872053-16872157)
chr8 (131-244)||(31597018-31597131)
chr8 (131-244)||(2733057-2733171)
chr8 (125-244)||(12707219-12707339)
chr8 (203-244)||(12783835-12783876)
chr8 (130-244)||(28646742-28646857)
chr8 (130-244)||(28651326-28651441)
chr8 (131-244)||(34018878-34018991)
chr8 (142-188)||(41541983-41542029)
chr8 (203-244)||(36424562-36424603)
chr8 (130-187)||(36885375-36885432)
chr8 (203-244)||(41159849-41159890)
chr8 (201-244)||(4994451-4994494)
chr8 (140-187)||(36568088-36568135)
chr8 (140-187)||(43397700-43397747)
chr8 (198-244)||(4658218-4658264)
chr8 (214-244)||(8645234-8645264)
chr8 (210-244)||(36110208-36110242)
chr8 (142-188)||(41701292-41701338)
chr8 (210-243)||(7173279-7173312)
chr8 (203-244)||(7472986-7473027)
chr8 (203-244)||(16327112-16327153)
chr8 (203-244)||(29440483-29440524)
chr8 (203-244)||(30439466-30439507)
chr8 (203-244)||(34718185-34718226)
chr8 (203-244)||(41701232-41701273)
chr8 (203-244)||(42110143-42110184)
chr8 (140-176)||(10592206-10592242)
chr8 (131-187)||(30439394-30439450)
[»] chr4 (47 HSPs)
chr4 (125-244)||(22819719-22819838)
chr4 (130-244)||(31657716-31657830)
chr4 (130-244)||(39344867-39344981)
chr4 (129-244)||(14010004-14010119)
chr4 (130-187)||(17683468-17683525)
chr4 (140-244)||(18882872-18882976)
chr4 (140-244)||(26718438-26718542)
chr4 (140-244)||(26731066-26731170)
chr4 (140-244)||(46405871-46405975)
chr4 (129-244)||(2999182-2999297)
chr4 (140-244)||(45143570-45143672)
chr4 (140-244)||(45152339-45152441)
chr4 (140-244)||(21172350-21172454)
chr4 (140-243)||(13139219-13139321)
chr4 (131-187)||(47099147-47099203)
chr4 (130-244)||(38338809-38338923)
chr4 (140-187)||(52846126-52846173)
chr4 (140-186)||(42491202-42491248)
chr4 (140-186)||(50831652-50831698)
chr4 (203-244)||(21617253-21617294)
chr4 (203-244)||(33860716-33860757)
chr4 (203-244)||(51573592-51573633)
chr4 (203-244)||(51852146-51852187)
chr4 (203-244)||(51887733-51887774)
chr4 (127-187)||(12799841-12799901)
chr4 (203-242)||(7628101-7628139)
chr4 (140-183)||(12595527-12595570)
chr4 (210-244)||(5249939-5249973)
chr4 (210-244)||(14451463-14451497)
chr4 (198-244)||(27326707-27326753)
chr4 (210-244)||(31559609-31559643)
chr4 (129-186)||(40609742-40609800)
chr4 (214-244)||(42667275-42667305)
chr4 (210-244)||(51194339-51194373)
chr4 (203-244)||(2313281-2313322)
chr4 (203-244)||(4949575-4949616)
chr4 (203-244)||(9362639-9362680)
chr4 (210-243)||(12595597-12595630)
chr4 (215-244)||(17683294-17683323)
chr4 (203-244)||(28657401-28657442)
chr4 (203-244)||(49768278-49768319)
chr4 (203-244)||(56271430-56271471)
chr4 (203-243)||(23853805-23853845)
chr4 (204-244)||(31092579-31092619)
chr4 (140-168)||(32696685-32696713)
chr4 (200-244)||(51746290-51746334)
chr4 (203-244)||(53299255-53299298)
[»] scaffold0141 (1 HSPs)
scaffold0141 (130-244)||(12002-12116)
[»] scaffold0532 (1 HSPs)
scaffold0532 (130-244)||(11034-11148)
[»] scaffold0136 (1 HSPs)
scaffold0136 (130-244)||(38495-38609)
[»] scaffold1956 (1 HSPs)
scaffold1956 (201-244)||(840-883)
[»] scaffold0221 (1 HSPs)
scaffold0221 (198-244)||(8284-8330)
[»] scaffold0471 (1 HSPs)
scaffold0471 (210-244)||(77-111)
[»] scaffold0010 (1 HSPs)
scaffold0010 (210-244)||(134270-134304)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 46543219 - 46543443
Alignment:
Q  17 tagaggaaatgaagtcagtgcttttttccctnnnnnnnnnnnnngaagtcagtgctttttcacgaggcctggcagtgttgnnnnnnnnatttgttctctt 116  Q
    |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  46543219 tagaggaaatgaagtcagtgcttttttccctaaaaaaaaaaaaagaagtcagtgctttttcacgaggcctggcagtgttgttttttttatttgttctctt 46543318  T
Q  117 tttcacttataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaa 216  Q
    |  ||||| | ||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||          ||||||||||| |||||||    
T  46543319 t--cacttgtgatagaggagtgttatttgaacaaccatttggttgataatttttgggacaattataattta-aaaaaaaaagttgatatttgcacgaaaa 46543415  T
Q  217 ccaaaacaatagagagataaagtaaaaa 244  Q
    ||||| ||||||||||||||||||||||    
T  46543416 ccaaagcaatagagagataaagtaaaaa 46543443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 50328027 - 50328142
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||          |||| |||||| |||||||||||| ||||||    
T  50328027 tagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaatag 50328126  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  50328127 agagataaagtaaaaa 50328142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 32914959 - 32915073
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||| ||||||||||||| |||||| ||||||||||||||          |||| |||||| ||||||||||||||||||||    
T  32914959 agaggagtgttatttgaacaactatttggttgacaacttttggaacaatcataatttacaaagaaaaagttggtatttgcacgaaaaccaaaacaataga 32915058  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  32915059 gagataaagtaaaaa 32915073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 40316831 - 40316945
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| |||| |||||| ||||||||||         |||| |||||| |||||||||||| |||||||    
T  40316831 agaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaagttggtatttgcacgaaaaccaaagcaataga 40316930  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  40316931 gagataaagtaaaaa 40316945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 50781454 - 50781571
Alignment:
Q  127 aatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaat 226  Q
    |||||||||||  |||||||||||||||||||| ||||| |||| |||||||||||||||||          ||| |||||| |||||||||||| ||||    
T  50781454 aatagaggagtgttatttgaacaaccatttggtagacaacttttaggacaatcataatttataaagaaaaaattggtatttgcacgaaaaccaaagcaat 50781553  T
Q  227 agagagataaagtaaaaa 244  Q
    ||||||||||||||||||    
T  50781554 agagagataaagtaaaaa 50781571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 52362665 - 52362552
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| |||| |||||| ||||||||||         |||| |||||| |||||||||||| ||||||||    
T  52362665 gaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaagttggtatttgcacgaaaaccaaagcaatagag 52362566  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  52362565 agataaagtaaaaa 52362552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 36577299 - 36577413
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| |||| |||||| ||||||||||         |||| |||||| ||||||| |||| ||||| |    
T  36577299 agaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaagttggtatttgcacgaaaatcaaagcaataaa 36577398  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  36577399 gagataaagtaaaaa 36577413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 13489845 - 13489732
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||| ||||||||||||| || |||||||| |||||||||          |||| |||||| |||||||||||| ||||||||    
T  13489845 gaggagtgttatttgaacaactatttggttgacaacttctgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaatagag 13489746  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  13489745 agataaagtaaaaa 13489732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 15704950 - 15705063
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||||||||||||||||||| || |||| |||||| ||||||||||         |||| |||||| ||||||||||||||||||||     
T  15704950 gaggagtgttatttgaacaaccatttggttgataacttttaggacaaccataatttataaagaaaaagttggtatttgcacgaaaaccaaaacaatagaa 15705049  T
Q  231 agataaagtaaaaa 244  Q
     |||||||||||||    
T  15705050 tgataaagtaaaaa 15705063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 48326150 - 48326038
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| |||||| |||| |||||||||          |||| |||||||||||||| |||| ||||||||    
T  48326150 gaggagtgttatttgaacaaccatttggttgacaacttttgg-acaaccataatttacaaagaaaaagttggtatttgtacgaaaatcaaagcaatagag 48326052  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  48326051 agataaagtaaaaa 48326038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 52714798 - 52714902
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||| ||||||| |||||||||||  ||||||||          |||| || ||| ||||||||||||||||||||||||||||||    
T  52714798 tatttgaacaaccatttgattgacaacttttgggacaacaataatttacaaagaaaaagttggtaattgcacgaaaaccaaaacaatagagagataaagt 52714897  T
Q  240 aaaaa 244  Q
    |||||    
T  52714898 aaaaa 52714902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 3226019 - 3226061
Alignment:
Q  202 atatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  3226019 atatttgtacgaaaaccaaagcaatagagagataaagtaaaaa 3226061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 8447919 - 8447806
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||||||| ||||| ||||| || || || |||||||||||||||          ||||||||||| || ||||| ||||||||||||    
T  8447919 gaggagtgttatttgaacaatcatttagttgataacttatgtgacaatcataatttacaaagaaaaagttgatatttgcacaaaaactaaaacaatagag 8447820  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  8447819 agataaagtaaaaa 8447806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 10889934 - 10890047
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||| ||||||||||||| ||||| ||||| |||||||||          |||| ||| || ||||||| |||| ||||||||    
T  10889934 gaggagtgttatttgaacaactatttggttgacaacttttgtgacaaccataatttacaaagaaaaagttggtatgtgcacgaaaatcaaagcaatagag 10890033  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  10890034 agataaagtaaaaa 10890047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 35137027 - 35136914
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||||||| ||||||||||||||||||| |||||| |||||||||          |||  |||||| || |||| |||| ||||||||    
T  35137027 gaggagtgttatttgaacaatcatttggttgacaatttttaggacaaccataatttacaaagaaaaagtttgtatttgcacaaaaatcaaagcaatagag 35136928  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  35136927 agataaagtaaaaa 35136914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 50881997 - 50882055
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttat 188  Q
    ||||||||  |||||||||||||||||| |||||||||| || ||||||||||||||||    
T  50881997 agaggagtgttatttgaacaaccatttgattgacaatttatgtgacaatcataatttat 50882055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 51571243 - 51571289
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  51571243 tatttgaacaaccatttgattgacaatttttgggacaaccataattt 51571289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 15015571 - 15015468
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| |||||||||| |||| | ||||||| |||||||||          |||| |||||| |||||||||||||||||||||| |||||||    
T  15015571 tatttgaacaactatttggttgataattat-gggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaaacaatagagatataaagt 15015473  T
Q  240 aaaaa 244  Q
    |||||    
T  15015472 aaaaa 15015468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 29147833 - 29147875
Alignment:
Q  202 atatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  29147833 atatttgcacggaaaccaaaacaatagagagataaagtaaaaa 29147875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 34254239 - 34254352
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||||||| ||||||||||| || |||||||||||  ||||||||          |||  |||||| |||||||||||| ||||| ||    
T  34254239 gaggagtgttatttgaacaatcatttggttgataacttttgggacaactataatttacaaagaaaaagtttgtatttgcacgaaaaccaaagcaataaag 34254338  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  34254339 agataaagtaaaaa 34254352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 29154962 - 29154905
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||  |||||||||||||||||||||||||| || ||||||||  ||||||||    
T  29154962 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaacgataattta 29154905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 33358055 - 33358159
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| || || ||||| |||||||||          || | |||||| ||||||| |||| |||| ||||||||||||    
T  33358055 tatttgaacaaccatttggttgacaacttatgtgacaaccataatttacaaagaaaaagtgggtatttgcacgaaaatcaaatcaattgagagataaagt 33358154  T
Q  240 aaaaa 244  Q
    |||||    
T  33358155 aaaaa 33358159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 51466878 - 51466837
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  51466878 tatttgtacggaaatcaaaacaatagagagataaagtaaaaa 51466837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 7101584 - 7101631
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||||||||| ||||||| ||| | |||||||||||||||    
T  7101584 tatttgaacaaccatttgattgacaactttagagacaatcataattta 7101631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 11597750 - 11597707
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| | |||||||||||||||||||||||| ||||||||||    
T  11597750 gatattagcacgaaaaccaaaacaatagagagagaaagtaaaaa 11597707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 19969457 - 19969496
Alignment:
Q  126 taatagaggagtactatttgaacaaccatttggttgacaa 165  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  19969457 taatagaggagtgttatttgaacaaccatttggttgacaa 19969496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 8411689 - 8411719
Alignment:
Q  214 aaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  8411689 aaaccaaaacaatagagagataaagtaaaaa 8411719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 19969529 - 19969563
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  19969529 acgaaaaccaaagcaatagagagataaagtaaaaa 19969563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 29418757 - 29418791
Alignment:
Q  209 tacgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||||||||||| ||||||||||||||||||||    
T  29418757 tacgaaaaccaaaataatagagagataaagtaaaa 29418791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 30745088 - 30745058
Alignment:
Q  213 aaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||||||||||||||||||||||||||||    
T  30745088 aaaaccaaaacaatagagagataaagtaaaa 30745058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 30766539 - 30766509
Alignment:
Q  213 aaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||||||||||||||||||||||||||||    
T  30766539 aaaaccaaaacaatagagagataaagtaaaa 30766509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 4608263 - 4608222
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||| |||| ||| ||||||    
T  4608263 tatttgtacgaaaaccaaaacaatagtgagaaaaattaaaaa 4608222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 35539233 - 35539274
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||||||| ||||||||||||||||||    
T  35539233 tatttgcacggaaaccaaaacaacagagagataaagtaaaaa 35539274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 44723472 - 44723431
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||| |||||||||||||||||||| ||| ||||||||||||    
T  44723472 tattggtacgaaaaccaaaacaataaagaaataaagtaaaaa 44723431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 45417883 - 45417842
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||||||||||||||||||| ||||||    
T  45417883 tatttgcacgaaaatcaaaacaatagagagataaattaaaaa 45417842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 8200258 - 8200202
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||  |||||||||| || |||||||||||| || |||||||| |||||||||    
T  8200258 gaggagtgttatttgaacagccttttggttgacaacttatgggacaaccataattta 8200202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 29877402 - 29877370
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaa 242  Q
    |||||||||||||||||||||||| ||||||||    
T  29877402 acgaaaaccaaaacaatagagagagaaagtaaa 29877370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 34040396 - 34040432
Alignment:
Q  141 atttgaacaaccatttggttgacaatttttgggacaa 177  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  34040396 atttgaacaaccatttgattgataatttttgggacaa 34040432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 50824843 - 50824811
Alignment:
Q  212 gaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||    
T  50824843 gaaaaccaaagcaatagagagataaagtaaaaa 50824811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 51436740 - 51436772
Alignment:
Q  212 gaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||| ||||||||||||||||    
T  51436740 gaaaaccaaaacaataaagagataaagtaaaaa 51436772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 189585 - 189704
Alignment:
Q  125 ataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaaca 224  Q
    |||| ||||||||  ||||||||||| |||||||||||||| ||||||||||||||||||||||         ||||||||||| |||||||||||| ||    
T  189585 ataaaagaggagtgttatttgaacaatcatttggttgacaacttttgggacaatcataatttataaagaaaaagttgatatttgcacgaaaaccaaagca 189684  T
Q  225 atagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||    
T  189685 atagagagataaagtaaaaa 189704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 15478841 - 15478728
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||| |||||||||||||||||||| |||| |||||||||          ||||||||||| ||||||||||||||||| |||    
T  15478841 gaggagtgttatttgaacaactatttggttgacaatttttggaacaaccataatttacaaagaaaaagttgatatttgcacgaaaaccaaaacaattgag 15478742  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  15478741 agataaagtaaaaa 15478728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 32912221 - 32912108
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||         |||| |||||  ||||||||||||||||||||     
T  32912221 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataatttataaagaaaaagttggtatttacacgaaaaccaaaacaatagat 32912122  T
Q  231 agataaagtaaaaa 244  Q
    | ||||||||||||    
T  32912121 aaataaagtaaaaa 32912108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 8675321 - 8675434
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||          |||| |||||| ||||||| |||| ||||||||    
T  8675321 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagag 8675420  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  8675421 agataaagtaaaaa 8675434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 43441925 - 43441808
Alignment:
Q  127 aatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaat 226  Q
    |||||||||||  |||||||||||||||||||||||||| ||||  ||||| |||||||||           ||| |||||| |||||||||||| ||||    
T  43441925 aatagaggagtgttatttgaacaaccatttggttgacaacttttaagacaaccataatttacaaagaaaaaattggtatttgcacgaaaaccaaagcaat 43441826  T
Q  227 agagagataaagtaaaaa 244  Q
    ||||||||||||||||||    
T  43441825 agagagataaagtaaaaa 43441808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 10649619 - 10649505
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| ||||| ||||| |||||||||          |||| ||| || ||||||| |||| |||||||    
T  10649619 agaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccataatttacaaagaaaaagttggtatgtgcacgaaaatcaaagcaataga 10649520  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  10649519 gagataaagtaaaaa 10649505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 19481069 - 19481183
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||| ||||||||||| || |||||||||||  ||||||||          |||| |||||| ||||| ||||||||||||||    
T  19481069 agaggagtgttatttgaacaatcatttggttgataacttttgggacaactataatttacaaagaaaaagttggtatttgcacgaagaccaaaacaataga 19481168  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  19481169 gagataaagtaaaaa 19481183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 19839883 - 19839987
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| |||||||||| || ||||||||||| |||||||||           |||||||||| |||||||||||| ||||||||| |||||||    
T  19839883 tatttgaacaactatttggttgataacttttgggacaaccataatttacaaagaaaaaattgatatttgcacgaaaaccaaagcaatagagatataaagt 19839982  T
Q  240 aaaaa 244  Q
    |||||    
T  19839983 aaaaa 19839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 34270510 - 34270397
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| ||||| ||||| |||||||||          || | |||||| |||||||||||  ||| ||||    
T  34270510 gaggagtgttatttgaacaaccatttggttgacaaattttgagacaaccataatttacaaaggaaaagtaggtatttgcacgaaaaccaatgcaacagag 34270411  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  34270410 agataaagtaaaaa 34270397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 1839242 - 1839346
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||| | |||||||||||| ||||| |||||||| |||||||||           | |||||||| |||||||||||||||||||| |||||||||    
T  1839242 tatttgaaaagccatttggttgataatttatgggacaaccataatttacaaagaaaaaatagatatttgcacgaaaaccaaaacaatagaaagataaagt 1839341  T
Q  240 aaaaa 244  Q
    |||||    
T  1839342 aaaaa 1839346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 15952942 - 15953046
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| || || ||||| |||||||||          || | |||||| ||||||| |||| |||||||||||||||||    
T  15952942 tatttgaacaaccatttggttgacaacttatgtgacaaccataatttacaaagaaaaagtgggtatttgcacgaaaatcaaagcaatagagagataaagt 15953041  T
Q  240 aaaaa 244  Q
    |||||    
T  15953042 aaaaa 15953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 41175593 - 41175707
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| || || ||||| |||||||||          || | |||||| ||||| | |||| |||||||    
T  41175593 agaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatttacaaagaaaaagtgggtatttgcacgaagatcaaagcaataga 41175692  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  41175693 gagataaagtaaaaa 41175707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 189516 - 189566
Alignment:
Q  125 ataatagaggagtactatttgaacaaccatttggttgacaatttttgggac 175  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  189516 ataaaagaggagtgttatttgaacaatcatttggttgacaatttttgggac 189566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 6517828 - 6517782
Alignment:
Q  198 gttgatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||    
T  6517828 gttggtatttgcacgaaaaccaaagcaatagagagataaagtaaaaa 6517782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 10658991 - 10659099
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||| ||||||| |||||| |||| | ||||||||          | |||||||| |||||||||||| |||||||    
T  10658991 agaggagtgttatttgaacaaccatttgattgacaacttttggcacaaccgtaatttataaagaaaaa-tagatatttgcacgaaaaccaaagcaataga 10659089  T
Q  230 gagataaagt 239  Q
    ||||||||||    
T  10659090 gagataaagt 10659099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 15008447 - 15008544
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaa 237  Q
    |||||||||||  ||||||||||||| || || |||||| ||||||||          || |||||||| ||||||||||||||||||||||||||||    
T  15008447 tatttgaacaattatttggttgacaacttatgtgacaataataatttacaaaagaaaagtagatatttgcacgaaaaccaaaacaatagagagataaa 15008544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 34124804 - 34124691
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||  ||||||||||||  ||||| |||||||||          |||| |||||  |||||||||||| ||||||||    
T  34124804 gaggagtgttatttgaacaaccatttaattgacaatttttaagacaaccataatttacaaagaaaaagttggtatttacacgaaaaccaaagcaatagag 34124705  T
Q  231 agataaagtaaaaa 244  Q
    | ||||||||||||    
T  34124704 aaataaagtaaaaa 34124691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 43213947 - 43214060
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| ||||   ||||  |||||||||          | | |||||| |||||||||||||||||| ||    
T  43213947 gaggagtgttatttgaacaaccatttggttgacaacttttaaaacaactataatttataaagaaaaaataggtatttgcacgaaaaccaaaacaataaag 43214046  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  43214047 agataaagtaaaaa 43214060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 6292232 - 6292191
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  6292232 tatttgtacgaaaatcaaaataatagagagataaagtaaaaa 6292191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 9581690 - 9581649
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  9581690 tatttgcacggaaaccaaaacaatagagagataaagtaaaaa 9581649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 30640901 - 30640860
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  30640901 tatttgtacgaaaatcaaagcaatagagagataaagtaaaaa 30640860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 34888769 - 34888810
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  34888769 tatttgtacggaaatcaaaacaatagagagataaagtaaaaa 34888810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 38704094 - 38704198
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||| || |||| ||||||||||| |||||||||          |||| |||||| ||||||| |||| ||||||| | |||||||    
T  38704094 tatttgaacaaccatttgattaacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagaaaaataaagt 38704193  T
Q  240 aaaaa 244  Q
    |||||    
T  38704194 aaaaa 38704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 6446415 - 6446462
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||| |||||||||||||||||| | |||| |||||||||    
T  6446415 tatttgaacaacaatttggttgacaattttttgaacaaccataattta 6446462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 21136364 - 21136333
Alignment:
Q  213 aaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||||||||||||||    
T  21136364 aaaaccaaaacaatagagagataaagtaaaaa 21136333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 9226475 - 9226370
Alignment:
Q  140 tatttgaacaacca-tttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaag 238  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||||||          ||   |||||| ||| ||| |||||||||||||||||||||    
T  9226475 tatttgaacaaccaatttggttgacaacttttgtgacaattataatttacaaagaaaaagtaagtatttgcacggaaatcaaaacaatagagagataaag 9226376  T
Q  239 taaaaa 244  Q
    ||||||    
T  9226375 taaaaa 9226370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 15267888 - 15267854
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||||    
T  15267888 acgaaaaccataacaatagagagataaagtaaaaa 15267854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 21353318 - 21353272
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||||||    
T  21353318 tatttaaacaaccatttgattgacaacttttgggacaaccataattt 21353272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 6446478 - 6446519
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  6446478 tatttgtacgaaaacaaaagcaatagagaaataaagtaaaaa 6446519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 18397125 - 18397166
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  18397125 tatttgcacgaaaaccaaagcaatagagagataaaataaaaa 18397166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 43196585 - 43196626
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  43196585 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 43196626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 35213448 - 35213562
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||          |||| |||||| |||||||||||| |||||||    
T  35213448 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaataga 35213547  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  35213548 gagataaagtaaaaa 35213562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 754325 - 754439
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||          |||| |||||| |||||||||||| |||||||    
T  754325 agaggagtgttatttgaacaaccatttggttgacaatttttggaacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaataga 754424  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  754425 gagataaagtaaaaa 754439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 1369534 - 1369430
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||          |||| |||||| ||||||| |||| |||||||||||||||||    
T  1369534 tatttgaacaaccatttggttgacaatttttgagacaaccataatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagataaagt 1369435  T
Q  240 aaaaa 244  Q
    |||||    
T  1369434 aaaaa 1369430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 13143270 - 13143383
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||          |||  |||||| ||||||| |||| ||||||||    
T  13143270 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagtttgtatttgcacgaaaatcaaagcaatagag 13143369  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  13143370 agataaagtaaaaa 13143383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 18141186 - 18141302
Alignment:
Q  128 atagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaata 227  Q
    ||||||||||  |||||||||||||||||||||||||| ||||| ||||| |||||||||          |||| ||| || ||||||| |||| |||||    
T  18141186 atagaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccataatttacaaagaataagttggtatgtgcacgaaaatcaaagcaata 18141285  T
Q  228 gagagataaagtaaaaa 244  Q
    |||||||||||||||||    
T  18141286 gagagataaagtaaaaa 18141302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 20822766 - 20822869
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||          ||| |||||| |||||||||||| |||||||||||||||||    
T  20822766 tatttgaacaaccatttggttgacaacttttaggacaaccataatttataaaaaaata-ttggtatttgcacgaaaaccaaagcaatagagagataaagt 20822864  T
Q  240 aaaaa 244  Q
    |||||    
T  20822865 aaaaa 20822869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 32046872 - 32046768
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| || |||||||| ||||||||||         |||| |||||| || ||| |||| ||||||||||||||||||    
T  32046872 tatttgaacaaccatttggttgacaacttatgggacaaccataatttataaagaaaaagttgttatttgcacaaaatccaacacaatagagagataaagt 32046773  T
Q  240 aaaaa 244  Q
    |||||    
T  32046772 aaaaa 32046768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 32459403 - 32459517
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||| ||||| ||||||| |||| |||||| |||||||||          |||| |||||| |||||||||||| |||||||    
T  32459403 agaggagtgttatttgaacaacaatttgattgacaacttttaggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaataga 32459502  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  32459503 gagataaagtaaaaa 32459517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 26832757 - 26832716
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  26832757 tatttgcacgaaaaccaaaacaatagagagataaagtaaaaa 26832716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 2688961 - 2689066
Alignment:
Q  140 tatttgaacaacca-tttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaag 238  Q
    ||||||||||| || |||||||||||| ||||| ||||| ||||||||||         || | |||||| ||  |||||||||||||||||||||||||    
T  2688961 tatttgaacaatcaatttggttgacaacttttgtgacaaccataatttataaagaaaaagtaggtatttgcacataaaccaaaacaatagagagataaag 2689060  T
Q  239 taaaaa 244  Q
    ||||||    
T  2689061 taaaaa 2689066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 31883200 - 31883246
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  31883200 tatttgaacaactatttgattgacaatttttgggacaaccataattt 31883246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 868912 - 868953
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  868912 tatttgtacaaaaaccaaatcaatagagagataaagtaaaaa 868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 2943608 - 2943504
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||||||||||||| ||||||| |   |||| |||| |||||         || |||||||| ||||||||||||| |||||||| |||||||    
T  2943608 tatttgaacaaccatttggttaacaatttataaaacaaccatattttataaagaaaaagtagatatttgcacgaaaaccaaaataatagagaaataaagt 2943509  T
Q  240 aaaaa 244  Q
    |||||    
T  2943508 aaaaa 2943504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 3832646 - 3832590
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||  |||||||||||||||||| ||||||| || |||||||| |||||||||    
T  3832646 gaggagtgttatttgaacaaccatttgattgacaacttatgggacaaccataattta 3832590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 17551348 - 17551379
Alignment:
Q  213 aaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||||||||||||||    
T  17551348 aaaaccaaaacaatagagagataaagtaaaaa 17551379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 23628472 - 23628429
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||    
T  23628472 gatatttgcacggaaaccaaaataatagagagataaagtaaaaa 23628429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 6856060 - 6856102
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcata 182  Q
    ||||||||||||||||||||||||||||| || ||||| ||||    
T  6856060 tatttgaacaaccatttggttgacaatttatgagacaaacata 6856102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 6531067 - 6531124
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||  ||||||||||||||||||||||| || |  |||||||| |||||||||    
T  6531067 agaggagtgttatttgaacaaccatttggttgataactaatgggacaaccataattta 6531124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 14699624 - 14699665
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||| ||| ||||||||||||||||||    
T  14699624 tatttgcacgaaaaccaaagcaacagagagataaagtaaaaa 14699665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 24842478 - 24842437
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| ||||||||| |||||||||||||||||||||    
T  24842478 tatttgcacggaaaccaaaaaaatagagagataaagtaaaaa 24842437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 28944939 - 28944980
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||| |||| ||||||||| ||||||||||||    
T  28944939 tatttgtacgaaaatcaaagcaatagagaaataaagtaaaaa 28944980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 34037089 - 34037048
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||||||||| ||||||||||||||||    
T  34037089 tatttgcacgaaaatcaaaacaataaagagataaagtaaaaa 34037048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 46852020 - 46852133
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||||||||          ||||||||||| ||||||||||||||||||||     
T  46852020 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataatttacaaagaaaaagttgatatttgcacgaaaaccaaaacaatagac 46852119  T
Q  231 agataaagtaaaaa 244  Q
    | ||||||||||||    
T  46852120 aaataaagtaaaaa 46852133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 3953362 - 3953476
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||||||         ||||||||||| | |||||||||| |||||||    
T  3953362 agaggagtgttatttgaacaatcatttggttgacaatttttgagacaatcataatttataaagaaaaagttgatatttgcatgaaaaccaaagcaataga 3953461  T
Q  230 gagataaagtaaaaa 244  Q
    |||||| ||||||||    
T  3953462 gagatagagtaaaaa 3953476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 21005062 - 21005177
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||  |||||||| |||||||||||||| || ||||||||||||||||||||||         ||||||||||| |||||||| ||| |||| |    
T  21005062 tagaggagtgatatttgaagaaccatttggttgataacttttgggacaatcataatttataaagaaaaagttgatatttgcacgaaaactaaagcaattg 21005161  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  21005162 agagataaagtaaaaa 21005177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 51465801 - 51465915
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||          |||| |||||| ||||||| |||| |||||||    
T  51465801 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaataga 51465900  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  51465901 gagataaagtaaaaa 51465915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 55400183 - 55400069
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| |||| |||||| ||||||||||          ||| |||||| |||||||||||| |||||||    
T  55400183 agaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaaattggtatttgcacgaaaaccaaagcaataga 55400084  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  55400083 gagataaagtaaaaa 55400069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 24482850 - 24482964
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||||||||||||| |||| ||||||||||| ||||| |||          |||| |||||| |||||||||||||||||| |    
T  24482850 agaggagtgttatttgaacaaccatttggtttacaacttttgggacaaccataacttacaaagaaaaagttggtatttgcacgaaaaccaaaacaatata 24482949  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  24482950 gagataaagtaaaaa 24482964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 50206857 - 50206971
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||| |||||| |||| |||||||| |||| |||||| |||||||||          ||||||||||| ||||||||||||||||||||    
T  50206857 agaggagtgttatttaaacaactatttagttgacaacttttaggacaaccataatttacaaagaaaaagttgatatttgcacgaaaaccaaaacaataga 50206956  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  50206957 gagataaagtaaaaa 50206971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 39697119 - 39697223
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| ||||| ||||||| ||||||||||| |||||||||           |||||||||| |||||||||||| |||||||||||||||||    
T  39697119 tatttgaacaactatttgattgacaacttttgggacaaccataatttacaaagaaaaaattgatatttgcacgaaaaccaaagcaatagagagataaagt 39697218  T
Q  240 aaaaa 244  Q
    |||||    
T  39697219 aaaaa 39697223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 46019636 - 46019532
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||           | | ||||||||||||||||||| |||||||||||||||||    
T  46019636 tatttgaacaaccatttggttgacaacttttggaacaaccataatttacaaagaaaagataggtatttgtacgaaaaccaaagcaatagagagataaagt 46019537  T
Q  240 aaaaa 244  Q
    |||||    
T  46019536 aaaaa 46019532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 20080245 - 20080142
Alignment:
Q  142 tttgaacaacca-tttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagta 240  Q
    |||||||||||| ||||||||| |||||||| ||||| ||||||||||         || | |||||| ||| |||||||||||||||||||||||||||    
T  20080245 tttgaacaaccaatttggttgataatttttgtgacaaccataatttataaagaaaaagtaggtatttgcacggaaaccaaaacaatagagagataaagta 20080146  T
Q  241 aaaa 244  Q
    ||||    
T  20080145 aaaa 20080142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 26645207 - 26645096
Alignment:
Q  133 ggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagag 232  Q
    |||||| |||||||||||| |||||| ||||||||| ||||| ||||||||||||          || |||||||| | |||||||||| |||||||||     
T  26645207 ggagtattatttgaacaactatttggatgacaatttatgggataatcataatttacaaagaaaaagtagatatttgcatgaaaaccaaagcaatagagaa 26645108  T
Q  233 ataaagtaaaaa 244  Q
    ||||||||||||    
T  26645107 ataaagtaaaaa 26645096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 46253803 - 46253692
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||  | ||||||| ||||||||||| |||||||||          |||| |||||| |||||||||||| ||||||||    
T  46253803 gaggagtgttatttgaacaaccat--gattgacaacttttgggacaaccataatttacaaagaaaatgttggtatttgcacgaaaaccaaagcaatagag 46253706  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  46253705 agataaagtaaaaa 46253692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 6999354 - 6999297
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||  |||||||||||||||||||||||||| || |||||||| |||||||||    
T  6999354 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataattta 6999297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 14771493 - 14771536
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataa 183  Q
    |||||||| ||||||||| |||||||||||||||||||||||||    
T  14771493 tatttgaataaccatttgtttgacaatttttgggacaatcataa 14771536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 21196298 - 21196251
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  21196298 tatttgaacaaccatttgattgacaatttatgggataatcataattta 21196251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 52937357 - 52937310
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  52937357 tatttgaacaaccatttggttgataatttttgagacaaccataattta 52937310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 18741301 - 18741243
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||| | ||||||||||||||||||||| || ||||| |||||||| |||||||||    
T  18741301 tagaggattgctatttgaacaaccatttggtggataatttatgggacaaccataattta 18741243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 24095294 - 24095407
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||| ||||||||||||||| ||||  ||||| |||||||||          || | |||||| |||||||||||| ||||||||    
T  24095294 gaggagtgttatttgaacatccatttggttgacaacttttatgacaaccataatttacaaagaaaaagtaggtatttgcacgaaaaccaaagcaatagag 24095393  T
Q  231 agataaagtaaaaa 244  Q
    | ||||||||||||    
T  24095394 aaataaagtaaaaa 24095407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 24645460 - 24645426
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||||||||||||    
T  24645460 acgaaaaccaaaacaatagagagataaagtaaaaa 24645426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 37927165 - 37927206
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  37927165 tatttgtacggaaaccaaagcaatagagagataaagtaaaaa 37927206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 28430839 - 28430799
Alignment:
Q  204 atttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  28430839 atttgtacaaaaaccaaaacaatagagaaataaagtaaaaa 28430799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 9719345 - 9719391
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||||||||| ||||||| |||||||| || ||||||||    
T  9719345 tatttgaacaaccatttgattgacaacttttgggataaccataattt 9719391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 29097520 - 29097554
Alignment:
Q  209 tacgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||||||||||||||||||||||| ||||||||    
T  29097520 tacgaaaaccaaaacaatagagagatgaagtaaaa 29097554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 30909133 - 30909099
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||||    
T  30909133 acgaaaaccataacaatagagagataaagtaaaaa 30909099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 32186140 - 32186106
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||| ||||||||||||    
T  32186140 acgaaaaccaaaacaatagagaaataaagtaaaaa 32186106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 44813414 - 44813448
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  44813414 acgaaaaccaaagcaatagagagataaagtaaaaa 44813448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 49761490 - 49761377
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||||||| ||||| |||||||| ||    ||||||||||||||||         || | |||||| || ||||||||| ||||||||    
T  49761490 gaggagtgttatttgaacaatcatttagttgacaacttacatgacaatcataatttataaagaaaaagtaggtatttgcacaaaaaccaaagcaatagag 49761391  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  49761390 agataaagtaaaaa 49761377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 49983323 - 49983353
Alignment:
Q  214 aaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  49983323 aaaccaaaacaatagagagataaagtaaaaa 49983353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 52485577 - 52485543
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  52485577 acgaaaaccaaagcaatagagagataaagtaaaaa 52485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 8846602 - 8846561
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  8846602 tatttgtacagaaaccaaaacaatggagagataaagtaaaaa 8846561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 33795685 - 33795726
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  33795685 tatttatacggaaaacaaaacaatagagagataaagtaaaaa 33795726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 36412307 - 36412250
Alignment:
Q  131 gaggagtactatttgaacaaccatttgg-ttgacaatttttgggacaatcataattta 187  Q
    |||||||  ||||||||||||||||||| ||||||| || |||||||| |||||||||    
T  36412307 gaggagtgttatttgaacaaccatttggtttgacaacttatgggacaaccataattta 36412250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 50638311 - 50638352
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||| ||||||||||||||||||||||    
T  50638311 tatttgcacggaaaccaaagcaatagagagataaagtaaaaa 50638352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 54694073 - 54694114
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  54694073 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 54694114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 42683938 - 42683898
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||| ||||||| |||| |||||||||||||||||||||    
T  42683938 tatttgcacgaaaatcaaagcaatagagagataaagtaaaa 42683898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 43573425 - 43573544
Alignment:
Q  125 ataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaaca 224  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||| ||||| ||||||||||          ||| |||||| |||||||||||| ||    
T  43573425 ataatagaggagtgttatttgaacaatcatttggttgacaatttttgagacaaccataatttataaagaaaaaattggtatttgcacgaaaaccaaagca 43573524  T
Q  225 atagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||    
T  43573525 atagagagataaagtaaaaa 43573544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 28036931 - 28036814
Alignment:
Q  127 aatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaat 226  Q
    |||||||||||  || ||||||||||||||||||||||| ||||||||||| |||||||||          |||| |||||| |||||||||||| ||||    
T  28036931 aatagaggagtgttaattgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaat 28036832  T
Q  227 agagagataaagtaaaaa 244  Q
    ||||||||||||||||||    
T  28036831 agagagataaagtaaaaa 28036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 33180598 - 33180711
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||| |||||||||||||||||||||||||| || || |||||| |||||||||          |   |||||| |||||||||||||||||||||    
T  33180598 gaggagtattatttgaacaaccatttggttgacaacttatgagacaatgataatttataaagagaaattatgtatttgcacgaaaaccaaaacaatagag 33180697  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  33180698 agataaagtaaaaa 33180711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 41894098 - 41893985
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||||||||||||| |||||||||||||| ||||| |||||||||          |||| ||| || |||||||||||||||| ||||    
T  41894098 gaggagtgttatttgaacaaccatttagttgacaatttttgtgacaaccataatttacaaaggaaaagttggtatatgcacgaaaaccaaaacaacagag 41893999  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  41893998 agataaagtaaaaa 41893985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 44184439 - 44184560
Alignment:
Q  123 ttataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaa 222  Q
    |||||| |||| |||| |||||||||||||||||||||||||| |||||| |||| |||||||||           | | |||||| ||||||||||||     
T  44184439 ttataaaagagtagtattatttgaacaaccatttggttgacaacttttggaacaaccataatttacaaagaaaaaataggtatttgcacgaaaaccaaag 44184538  T
Q  223 caatagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||||    
T  44184539 caatagagagataaagtaaaaa 44184560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 42555738 - 42555634
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||         || |  |||||||||||||||||  |||||||||||||||||    
T  42555738 tatttgaacaaccatttggttgacaacttttgagacaaccataatttataaaggaaaagtaggcatttgtacgaaaaccaatgcaatagagagataaagt 42555639  T
Q  240 aaaaa 244  Q
    |||||    
T  42555638 aaaaa 42555634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 7817821 - 7817706
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||  |||||||||||||||||||||||||| || || ||||| |||||||||          || |||||||| ||||||| |||| ||||||    
T  7817821 tagaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatttacaaagaaaaagtggatatttgcacgaaaatcaaagcaatag 7817722  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  7817721 agagataaagtaaaaa 7817706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 12645796 - 12645911
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| || || |||||||||          ||||||||||| ||||||| |||| ||||||    
T  12645796 tagaggagtgatatttgaacaactatttggttgacaacttttgagataaccataatttacaaagaaaaagttgatatttgcacgaaaatcaaagcaatag 12645895  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  12645896 agagataaagtaaaaa 12645911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 11352861 - 11352975
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||           ||| |||||  |||||||||||| ||||| |    
T  11352861 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaatttggtatttacacgaaaaccaaagcaataaa 11352960  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  11352961 gagataaagtaaaaa 11352975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 40231664 - 40231707
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40231664 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 40231707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 10055529 - 10055633
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||| |||||||||||||||||||| || ||||||||  ||||||||          |||| ||||||||| ||||||||| |||||||||||||||||    
T  10055529 tatttaaacaaccatttggttgacaacttatgggacaactataatttacaaagaaaaagttggtatttgtacaaaaaccaaagcaatagagagataaagt 10055628  T
Q  240 aaaaa 244  Q
    |||||    
T  10055629 aaaaa 10055633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 13729909 - 13729796
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||| | |||||||||||||||||| ||||||||||| |||||||||           ||| |||||| |||||||||||  ||||||||    
T  13729909 gaggagtgttatttcagcaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaaattggtatttgcacgaaaaccaacgcaatagag 13729810  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  13729809 agataaagtaaaaa 13729796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 46532677 - 46532572
Alignment:
Q  140 tatttgaacaacca-tttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaag 238  Q
    |||||||||||||| |||||||||||| ||||| ||||| ||||||||||          | | |||||  |||||||||||||||||||||||||||||    
T  46532677 tatttgaacaaccaatttggttgacaacttttgtgacaaccataatttataaagaaaaattaggtatttacacgaaaaccaaaacaatagagagataaag 46532578  T
Q  239 taaaaa 244  Q
    ||||||    
T  46532577 taaaaa 46532572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 3343227 - 3343331
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| ||||| ||||||| ||||  ||||| ||||||||||         ||||  ||||| |||||||||||| |||||||||||||||||    
T  3343227 tatttgaacaactatttgattgacaacttttaagacaaccataatttataaagaaaaagttgggatttgcacgaaaaccaaagcaatagagagataaagt 3343326  T
Q  240 aaaaa 244  Q
    |||||    
T  3343327 aaaaa 3343331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 31844565 - 31844606
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  31844565 tatttgtacaaaaaccaaaacaatagagagataaagtaaaaa 31844606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 35588788 - 35588892
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||  |||| |||||||| |||||| ||||||||          |||| |||||| ||||||| |||| |||||||||||||||||    
T  35588788 tatttgaacaaccatttaattgataatttttgagacaattataatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagataaagt 35588887  T
Q  240 aaaaa 244  Q
    |||||    
T  35588888 aaaaa 35588892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 43482634 - 43482593
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  43482634 tatttgcacgaaaaccaaaacaatagagagataaagtaaaaa 43482593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 41399130 - 41399164
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||||||||||||    
T  41399130 acgaaaaccaaaacaatagagagataaagtaaaaa 41399164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 3062441 - 3062400
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  3062441 tatttgcacaaaaaccaaaacaatagagagataaagtaaaaa 3062400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 4225856 - 4225823
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    ||||||||||||||||||||||||||||||||||    
T  4225856 acgaaaaccaaaacaatagagagataaagtaaaa 4225823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 16980468 - 16980423
Alignment:
Q  142 tttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||    
T  16980468 tttgaacaaccatttagttgacaacttttgagacaatcataattta 16980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 20482638 - 20482597
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  20482638 tatttgtacataaaccaaaacaatagagagataaagtaaaaa 20482597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 25067334 - 25067293
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  25067334 tatttgcatgaaaaccaaaacaatagagagataaagtaaaaa 25067293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 1504326 - 1504358
Alignment:
Q  209 tacgaaaaccaaaacaatagagagataaagtaa 241  Q
    |||||||||||||||||||||||||||||||||    
T  1504326 tacgaaaaccaaaacaatagagagataaagtaa 1504358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 6109938 - 6109970
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaa 242  Q
    |||||||||||||||||||||||||||||||||    
T  6109938 acgaaaaccaaaacaatagagagataaagtaaa 6109970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 34757348 - 34757416
Alignment:
Q  121 acttataatagaggagtactatttgaacaacca-tttggttgacaatttttgggacaatcataatttat 188  Q
    |||||| || |||||||  |||||||||||||| |||||||||||| ||||| ||||| ||||||||||    
T  34757348 acttattattgaggagtgttatttgaacaaccaatttggttgacaacttttgtgacaaccataatttat 34757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 10700083 - 10700129
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||||    
T  10700083 tatttgaacaatcatttgattgacaacttttgggacaaccataattt 10700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 41430118 - 41430152
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  41430118 acgaaaaccaaagcaatagagagataaagtaaaaa 41430152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 49069418 - 49069372
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||||||||| ||||||| |||||||||||  |||||||    
T  49069418 tatttgaacaaccatttgattgacaacttttgggacaactataattt 49069372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 21559909 - 21559868
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  21559909 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 21559868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 42926250 - 42926209
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||  ||| |||||||||||||||||||||||||||    
T  42926250 tatttgtacagaaatcaaaacaatagagagataaagtaaaaa 42926209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 46812865 - 46812906
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  46812865 tatttgcacaaaaatcaaaacaatagagagataaagtaaaaa 46812906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 36533900 - 36533856
Alignment:
Q  142 tttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    ||||||||||||||| | |||||| ||||||||||| ||||||||    
T  36533900 tttgaacaaccattttgatgacaacttttgggacaaccataattt 36533856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 41458781 - 41458745
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaa 165  Q
    |||||||||  ||||||||||||||||||||||||||    
T  41458781 tagaggagtgttatttgaacaaccatttggttgacaa 41458745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 2563878 - 2563774
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||||         |||| |||||| |||||||||||||||||||| |||||||||    
T  2563878 tatttgaacaatcatttggttgacaacttttaggacaatcataatttataaagaaaaagttggtatttgcacgaaaaccaaaacaatagaaagataaagt 2563779  T
Q  240 aaaaa 244  Q
    |||||    
T  2563778 aaaaa 2563774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 6170814 - 6170700
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| |||| |||||| ||||||||||          ||| |||||| |||||||||||| |||||||    
T  6170814 agaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaaaaaaaaattggtatttgcacgaaaaccaaagcaataga 6170715  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  6170714 gagataaagtaaaaa 6170700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 32870010 - 32869896
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||           ||| |||||| |||||||||||| ||||| |    
T  32870010 agaggagtgttatttgaacaaccatttggttgacaatttttgggacaaccataatttacaaagaaaaaattggtatttgcacgaaaaccaaagcaataaa 32869911  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  32869910 gagataaagtaaaaa 32869896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 35589275 - 35589388
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||| |||||| |||| ||||| |||||||||||||| |||||||||          ||||||||||| |||||||||||||||||||||    
T  35589275 gaggagtgttatttaaacaactatttagttgataatttttgggacaaccataatttacaaagaaaaagttgatatttgcacgaaaaccaaaacaatagag 35589374  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  35589375 agataaagtaaaaa 35589388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 6998955 - 6999069
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||| |||||||||||||||||||| |||| |||||| ||||||||||          ||| |||||| |||||||||||| |||||||    
T  6998955 agaggagtgttatttaaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaaattggtatttgcacgaaaaccaaagcaataga 6999054  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  6999055 gagataaagtaaaaa 6999069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 13765584 - 13765470
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||          |||| |||||| |||||||||||| |||| ||    
T  13765584 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaataaaaagttggtatttgcacgaaaaccaaagcaatcga 13765485  T
Q  230 gagataaagtaaaaa 244  Q
     ||||||||||||||    
T  13765484 aagataaagtaaaaa 13765470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 13347711 - 13347816
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta-tnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaag 238  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||           |||| || ||| |||||||||||| ||||||||||||||||    
T  13347711 tatttgaacaaccatttggttgacaatttttgggacaaccataatttacaaaaaaataagttggtaattgcacgaaaaccaaagcaatagagagataaag 13347810  T
Q  239 taaaaa 244  Q
    ||||||    
T  13347811 taaaaa 13347816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 24562904 - 24563016
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||||||||||||||||| |||| |||||| ||||||||||         |||| |||||  |||||||||||| |||||||    
T  24562904 agaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaggttggtatttacacgaaaaccaaagcaataga 24563003  T
Q  230 gagataaagtaaa 242  Q
    |||||||| ||||    
T  24563004 gagataaaataaa 24563016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 9377630 - 9377526
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||||||||| |||||||| || || |||| ||||||||||          || |||||||| |||||||||||| |||||||||||||||||    
T  9377630 tatttgaacaaccatttagttgacaacttatgagacagtcataatttacaaagaaaaagtagatatttgcacgaaaaccaaagcaatagagagataaagt 9377531  T
Q  240 aaaaa 244  Q
    |||||    
T  9377530 aaaaa 9377526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 9634333 - 9634437
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||| |||||||||||||| |||| | |||| |||||||||          |||| |||||| |||||||||||||||||| |||||||||||    
T  9634333 tatttgaacaatcatttggttgacaactttttgaacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaaacaatatagagataaagt 9634432  T
Q  240 aaaaa 244  Q
    |||||    
T  9634433 aaaaa 9634437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 39449441 - 39449337
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||| |||||||||||| |||||||||||||| |||| ||| ||||||         |||| |||||| ||||||| |||| |||||||||||||||||    
T  39449441 tatttaaacaaccatttgattgacaatttttggaacaaccatcatttataaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagataaagt 39449342  T
Q  240 aaaaa 244  Q
    |||||    
T  39449341 aaaaa 39449337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 36643972 - 36644028
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  36643972 gaggagtgttatttgaacaaccatttggttgacaatttatgggacaaccataattta 36644028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 36211944 - 36212061
Alignment:
Q  127 aatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaat 226  Q
    |||||| ||||  ||||||||||||||||||||||| || || || ||||||||||||||||         ||  ||||||| ||||||| ||||  |||    
T  36211944 aatagatgagtgttatttgaacaaccatttggttgataaattatgtgacaatcataatttataaagaaaaagtaaatatttgcacgaaaatcaaagtaat 36212043  T
Q  227 agagagataaagtaaaaa 244  Q
    ||||||||||||||||||    
T  36212044 agagagataaagtaaaaa 36212061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 23352794 - 23352851
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||  |||||||||||||||||||||||||| || |||||||| |||||||||    
T  23352794 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataattta 23352851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 3012739 - 3012795
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    ||||||||  |||||||||||||||||||||||||| || |||||||| ||||||||    
T  3012739 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataattt 3012795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 4023247 - 4023294
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||    
T  4023247 tatttcaacaaccatttggttgacaatttatgagacaatcataattta 4023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 7574609 - 7574562
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  7574609 tatttgaacaaccatttggttgacaatttttggaacaactataattta 7574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 39213658 - 39213771
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||| |||||||||||| ||||||| ||||||||||| ||| |||||          |||| |||||| |||||||| |||  |||||||    
T  39213658 gaggagtgttatttaaacaaccatttgattgacaacttttgggacaaccatcatttacaaagaaaaagttggtatttgcacgaaaactaaaggaatagag 39213757  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  39213758 agataaagtaaaaa 39213771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 4061922 - 4061963
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  4061922 tatttgcacggaaaccaaaacaatagagagataaagtaaaaa 4061963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 7648501 - 7648460
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  7648501 tatttgcacaaaaaccaaaacaatagagagataaagtaaaaa 7648460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 28245839 - 28245798
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  28245839 tatttgcacgaaaaccaaagcaatagagagataaagtaaaaa 28245798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 30546330 - 30546371
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  30546330 tatttgcatgaaaaccaaaacaatagagagataaagtaaaaa 30546371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 37105812 - 37105708
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| ||||||||||||| ||||| ||||| |||||||||          |||| ||| || |||||||| ||| ||||||| |||||||||    
T  37105812 tatttgaacaactatttggttgacaacttttgtgacaaccataatttacaaagaaaaagttggtatgtgcacgaaaacgaaagcaatagaaagataaagt 37105713  T
Q  240 aaaaa 244  Q
    |||||    
T  37105712 aaaaa 37105708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 40936949 - 40937065
Alignment:
Q  128 atagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaata 227  Q
    ||||||||||  |||||||| |||||||| | ||||||||| || ||||| |||||||||          || | |||||| ||||||| |||| |||||    
T  40936949 atagaggagtgttatttgaataaccatttagctgacaatttatgtgacaaccataatttacaaagaaaaagtgggtatttgcacgaaaatcaaagcaata 40937048  T
Q  228 gagagataaagtaaaaa 244  Q
    |||||||||||||||||    
T  40937049 gagagataaagtaaaaa 40937065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 4299281 - 4299324
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||    
T  4299281 gatatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 4299324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 11384981 - 11385016
Alignment:
Q  209 tacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||| |||||||||||||||||||||||||||||||    
T  11384981 tacggaaaccaaaacaatagagagataaagtaaaaa 11385016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 20911914 - 20911871
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  20911914 gatatttgcacggaaaccaaagcaatagagagataaagtaaaaa 20911871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 26277208 - 26277165
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||    
T  26277208 gatatttgtacggaaactaaagcaatagagagataaagtaaaaa 26277165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 36517370 - 36517323
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||| ||||| |||| || |||||||||||||||||||||    
T  36517370 tatttgaacaactatttgattgataacttttgggacaatcataattta 36517323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 7258458 - 7258504
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||||||||| || ||||||||||||||||  |||||||    
T  7258458 tatttgaacaaccatttgattaacaatttttgggacaactataattt 7258504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 10711907 - 10711794
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||| |||||||||| || |||||  ||||||||||||||           | | |||||  |||||||||||| ||||||||    
T  10711907 gaggagtgttatttgaacaactatttggttgataacttttgaaacaatcataatttacaaagaaaaaataggtatttacacgaaaaccaaagcaatagag 10711808  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  10711807 agataaagtaaaaa 10711794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 14233678 - 14233720
Alignment:
Q  202 atatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||| || ||||||||| ||||||||||||||||||||||    
T  14233678 atatttgcacaaaaaccaaagcaatagagagataaagtaaaaa 14233720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 34119550 - 34119596
Alignment:
Q  141 atttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||||||||||||||||||| || || |||| ||||||||||    
T  34119550 atttgaacaaccatttggttgacaacttatgagacactcataattta 34119596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 34119619 - 34119653
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||| |||||||||||||||||||||||||||    
T  34119619 acgaaaatcaaaacaatagagagataaagtaaaaa 34119653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 39449084 - 39449118
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||| |||||||||||||||||||||||||||    
T  39449084 acgaaaatcaaaacaatagagagataaagtaaaaa 39449118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 12498596 - 12498637
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  12498596 tatttgcacgaaaaccaagacaatagagagataaaataaaaa 12498637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 15269972 - 15269931
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  15269972 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 15269931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 18876881 - 18876922
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||| ||||||||||||||||||||||    
T  18876881 tatttgcacggaaaccaaagcaatagagagataaagtaaaaa 18876922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 25881655 - 25881614
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||    
T  25881655 tatttatacgaaaaccaaagcaacagagagataaagtaaaaa 25881614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 29361131 - 29361090
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||| |||| |||| ||||||||||||||||||||||    
T  29361131 tatttgtacaaaaatcaaagcaatagagagataaagtaaaaa 29361090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 42678860 - 42678819
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||| ||||||||||||||||||||||    
T  42678860 tatttgcacggaaaccaaagcaatagagagataaagtaaaaa 42678819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 44711949 - 44711990
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  44711949 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 44711990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 16199681 - 16199713
Alignment:
Q  212 gaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||| |||||||||||    
T  16199681 gaaaaccaaaacaatagagaggtaaagtaaaaa 16199713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 38560788 - 38560748
Alignment:
Q  204 atttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||| ||||||| |||| ||||||||||||||||||||||    
T  38560788 atttgcacgaaaatcaaagcaatagagagataaagtaaaaa 38560748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 41586548 - 41586612
Alignment:
Q  123 ttataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||| |||||| |||  ||||||||||||||||| |||||||| || ||| |||| |||||||||    
T  41586548 ttattatagagaagtgttatttgaacaaccatttagttgacaacttatggaacaaccataattta 41586612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 42569615 - 42569730
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||         ||||||||||  ||||||| |||| |||||     
T  42569615 tagaggagtattatttgaacaaccatttggttgataatttttaggacaaccataatttataaagaaaaagttgatatttacacgaaaatcaaagcaataa 42569714  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  42569715 agagataaagtaaaaa 42569730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 16872053 - 16872157
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||          ||||||||||| ||||||| |||| |||||||||||||||||    
T  16872053 tatttgaacaaccatttggttaacaacttttgggacaaccataatttacaaagaaaaagttgatatttgcacgaaaatcaaagcaatagagagataaagt 16872152  T
Q  240 aaaaa 244  Q
    |||||    
T  16872153 aaaaa 16872157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 31597131 - 31597018
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  |||||||||||||||||| |||| || ||||| |||||||||||||||          |||| |||||| || ||||||||||||||||||    
T  31597131 gaggagtgttatttgaacaaccatttgattgataacttttgagacaatcataatttacaaagaaaaagttggtatttgcacaaaaaccaaaacaatagag 31597032  T
Q  231 agataaagtaaaaa 244  Q
    ||||||||||||||    
T  31597031 agataaagtaaaaa 31597018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 2733171 - 2733057
Alignment:
Q  131 gaggagtactatttgaacaaccattt-ggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    |||||||  |||||||||||||| || |||| |||||||||| ||||||||||||||||         || | |||||| ||| ||||||||| ||||||    
T  2733171 gaggagtgttatttgaacaaccaattcggttaacaatttttgtgacaatcataatttataaagaaaaagtaggtatttgcacggaaaccaaaataataga 2733072  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  2733071 gagataaagtaaaaa 2733057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 12707339 - 12707219
Alignment:
Q  125 ataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta-tnnnnnnnnngttgatatttgtacgaaaaccaaaac 223  Q
    |||||||||||||  |||||||||||||||||||||||  | || |||||||| |||||||||           |||| |||||  ||||||||||||||    
T  12707339 ataatagaggagtgttatttgaacaaccatttggttgagcacttatgggacaaccataatttacaaagaaaaaagttggtatttacacgaaaaccaaaac 12707240  T
Q  224 aatagagagataaagtaaaaa 244  Q
    |||||||||||||| ||||||    
T  12707239 aatagagagataaattaaaaa 12707219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 12783876 - 12783835
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  12783876 tatttgtacggaaaccaaaacaatagagagataaagtaaaaa 12783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 28646857 - 28646742
Alignment:
Q  130 agaggagtactatttgaacaacca-tttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    ||||||||  |||||||||||||| |||| ||||||| || || || || ||||||||||         || ||||||||||||||||||||| ||| ||    
T  28646857 agaggagtgttatttgaacaaccaatttgattgacaacttatgtgataaccataatttataaagaaaaagtagatatttgtacgaaaaccaaagcaacag 28646758  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  28646757 agagataaagtaaaaa 28646742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 28651441 - 28651326
Alignment:
Q  130 agaggagtactatttgaacaacca-tttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    ||||||||  |||||||||||||| |||| ||||||| || || || || ||||||||||         || ||||||||||||||||||||| ||| ||    
T  28651441 agaggagtgttatttgaacaaccaatttgattgacaacttatgtgataaccataatttataaagaaaaagtagatatttgtacgaaaaccaaagcaacag 28651342  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  28651341 agagataaagtaaaaa 28651326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 34018991 - 34018878
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagag 230  Q
    |||||||  ||||||| ||||||||||||| |||| ||| ||||||| |||||||||          |||| || ||| |||||| ||||||||||||||    
T  34018991 gaggagtgttatttgatcaaccatttggttaacaactttcgggacaaccataatttacaaagaaaaagttggtaattgcacgaaacccaaaacaatagag 34018892  T
Q  231 agataaagtaaaaa 244  Q
     |||||||||||||    
T  34018891 tgataaagtaaaaa 34018878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 41542029 - 41541983
Alignment:
Q  142 tttgaacaaccatttggttgacaatttttgggacaatcataatttat 188  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||    
T  41542029 tttgaacaaccatttggttgacaacttatgggacaaccataatttat 41541983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 36424562 - 36424603
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  36424562 tatttgcacggaaaccaaaacaatagagagataaagtaaaaa 36424603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 36885375 - 36885432
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||  |||||||||||||||||||| ||||| || |||||||| |||||||||    
T  36885375 agaggagtgttatttgaacaaccatttggtggacaacttatgggacaaccataattta 36885432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 41159849 - 41159890
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  41159849 tatttgcacgaaaaccaaagcaatagagagataaagtaaaaa 41159890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 4994494 - 4994451
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  4994494 gatatttgcacggaaaccaaatcaatagagagataaagtaaaaa 4994451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 36568135 - 36568088
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||||||||| ||||||| || |||||||| |||||||||    
T  36568135 tatttgaacaaccatttgattgacaacttatgggacaaccataattta 36568088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 43397747 - 43397700
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||| ||||||||||||| ||| | |||||||||||||||    
T  43397747 tatttgaacaactatttggttgacaactttagagacaatcataattta 43397700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 4658218 - 4658264
Alignment:
Q  198 gttgatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||| |||||| || ||||||||| ||||||||||||||||||||||    
T  4658218 gttggtatttgcacaaaaaccaaagcaatagagagataaagtaaaaa 4658264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 8645264 - 8645234
Alignment:
Q  214 aaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  8645264 aaaccaaaacaatagagagataaagtaaaaa 8645234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 36110242 - 36110208
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||||    
T  36110242 acgaaaaccataacaatagagagataaagtaaaaa 36110208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 41701338 - 41701292
Alignment:
Q  142 tttgaacaaccatttggttgacaatttttgggacaatcataatttat 188  Q
    ||||||||||| ||||||||| ||||| | |||||||||||||||||    
T  41701338 tttgaacaaccgtttggttgataatttattggacaatcataatttat 41701292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 7173312 - 7173279
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||||||||||||||||| |||||||||||||    
T  7173312 acgaaaaccaaaacaatagaaagataaagtaaaa 7173279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 7472986 - 7473027
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  7472986 tatttgcacgaaaactaaagcaatagagagataaagtaaaaa 7473027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 16327112 - 16327153
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| | ||||||||||| |||||||||||||||||||||    
T  16327112 tatttgcaagaaaaccaaaataatagagagataaagtaaaaa 16327153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 29440483 - 29440524
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| ||| |||||||||||||||||||||||||||    
T  29440483 tatttgcacggaaatcaaaacaatagagagataaagtaaaaa 29440524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 30439466 - 30439507
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  30439466 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 30439507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 34718226 - 34718185
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||| |||| |||| ||||||||||||||||||||||    
T  34718226 tatttgtacaaaaatcaaagcaatagagagataaagtaaaaa 34718185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 41701273 - 41701232
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||| ||||||||||| ||||||||||||||    
T  41701273 tatttgcacgaaaactaaaacaatagatagataaagtaaaaa 41701232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 42110143 - 42110184
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| | |||||||||||||||||| ||||||||||||    
T  42110143 tatttgtatggaaaccaaaacaatagagaaataaagtaaaaa 42110184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 10592206 - 10592242
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggaca 176  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  10592206 tatttgaacaaccatttgattgacaacttttgggaca 10592242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 30439394 - 30439450
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||  ||||||||||||||||||||||| || || || ||||| |||||||||    
T  30439394 gaggagtgttatttgaacaaccatttggttgataacttatgtgacaaccataattta 30439450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 22819838 - 22819719
Alignment:
Q  125 ataatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaaca 224  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||          |||| |||||| ||||||| |||| ||    
T  22819838 ataatagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaatcaaagca 22819739  T
Q  225 atagagagataaagtaaaaa 244  Q
    ||| ||||||||||||||||    
T  22819738 ataaagagataaagtaaaaa 22819719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 31657830 - 31657716
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||| ||| |||||          |||| |||||  |||||||||||| |||||||    
T  31657830 agaggagtgttatttaaacaaccatttggttgacaatttttgggacaaccatcatttacatagaaaaagttggtatttacacgaaaaccaaagcaataga 31657731  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  31657730 gagataaagtaaaaa 31657716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 39344867 - 39344981
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||||||||||||||| || ||||| |||||||||||||||           ||| |||||| |||||||||||| |||||||    
T  39344867 agaggagtgttatttgaacaaccatttggttgataacttttgagacaatcataatttacaaagaaaaaattggtatttgcacgaaaaccaaagcaataga 39344966  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  39344967 gagataaagtaaaaa 39344981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 14010004 - 14010119
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||  |||||||| ||  ||||||||||||| ||||||||||| ||||||||||          ||| |||||| ||||||||||||| |||||    
T  14010004 tagaggagtgttatttgaataattatttggttgacaacttttgggacaaccataatttataaagaaaaaattggtatttgcacgaaaaccaaaataatag 14010103  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  14010104 agagataaagtaaaaa 14010119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 17683525 - 17683468
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  17683525 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataattta 17683468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 18882872 - 18882976
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||           | | |||||||||||||| |||| |||||||||||||||||    
T  18882872 tatttgaacaaccatttggttgacaacttttggaaaaatcataatttacaaagaaaaaataggtatttgtacgaaaatcaaagcaatagagagataaagt 18882971  T
Q  240 aaaaa 244  Q
    |||||    
T  18882972 aaaaa 18882976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 26718542 - 26718438
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||          |||| |||||| || |||| ||||  ||||||||||||||||    
T  26718542 tatttgaataaccatttggttgataatttttgggacaatcataatttacaaagaaaaagttggtatttgcacaaaaaacaaagtaatagagagataaagt 26718443  T
Q  240 aaaaa 244  Q
    |||||    
T  26718442 aaaaa 26718438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 26731170 - 26731066
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||          |||| |||||| || |||| ||||  ||||||||||||||||    
T  26731170 tatttgaataaccatttggttgataatttttgggacaatcataatttacaaagaaaaagttggtatttgcacaaaaaacaaagtaatagagagataaagt 26731071  T
Q  240 aaaaa 244  Q
    |||||    
T  26731070 aaaaa 26731066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 46405871 - 46405975
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||| ||||||||||| ||||||| |||||| |||||||||          |||| |||||| ||||||| |||| |||||||||||||||||    
T  46405871 tatttgaacaatcatttggttgataattttttggacaaccataatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagataaagt 46405970  T
Q  240 aaaaa 244  Q
    |||||    
T  46405971 aaaaa 46405975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 2999297 - 2999182
Alignment:
Q  129 tagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatag 228  Q
    |||||||||  |||||||||||||||||  ||||||| |||| |||||| |||||||||          |||| |||||| | |||||||||| ||||||    
T  2999297 tagaggagtgttatttgaacaaccatttaattgacaacttttaggacaaccataatttacaaagaaaaagttggtatttgcatgaaaaccaaagcaatag 2999198  T
Q  229 agagataaagtaaaaa 244  Q
    ||||||||||||||||    
T  2999197 agagataaagtaaaaa 2999182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 45143570 - 45143672
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||          |||| |||||| ||||||||||||| |||  |||||||||||    
T  45143570 tatttgaacaactatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaaataat--agagataaagt 45143667  T
Q  240 aaaaa 244  Q
    |||||    
T  45143668 aaaaa 45143672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 45152339 - 45152441
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||          |||| |||||| ||||||||||||| |||  |||||||||||    
T  45152339 tatttgaacaactatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaaataat--agagataaagt 45152436  T
Q  240 aaaaa 244  Q
    |||||    
T  45152437 aaaaa 45152441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 21172454 - 21172350
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    |||||||||||| |||| ||||| ||||| ||||| ||||||||||||          || ||||||  ||||||||||||||||||| |||||||||||    
T  21172454 tatttgaacaactatttagttgataatttatgggataatcataatttacaaagaaaaagtagatattgatacgaaaaccaaaacaataaagagataaagt 21172355  T
Q  240 aaaaa 244  Q
    |||||    
T  21172354 aaaaa 21172350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 13139321 - 13139219
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaatagagagataaagt 239  Q
    ||||||||||||||||||||||| ||||||||| ||||  ||||||||          |||| |||||| ||||||||||||| |||||||||||||| |    
T  13139321 tatttgaacaaccatttggttgataatttttgg-acaactataatttacaaagaaaaagttggtatttgcacgaaaaccaaaaaaatagagagataaatt 13139223  T
Q  240 aaaa 243  Q
    ||||    
T  13139222 aaaa 13139219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 47099203 - 47099147
Alignment:
Q  131 gaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||| |||||||||    
T  47099203 gaggagtgttatttgaacaaccatttggttgataacttttgggacaaccataattta 47099147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 38338809 - 38338923
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||| |||| |||||| ||||||||||| ||||||||| |||| ||||||||||          | | |||||| || |||| |||| |||||||    
T  38338809 agaggagtattattcgaacaatcatttggttgataatttttggaacaaccataatttataaagaaaaaataggtatttgcacaaaaatcaaagcaataga 38338908  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  38338909 gagataaagtaaaaa 38338923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 52846126 - 52846173
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  52846126 tatttgaacaactatttgattgacaatttttaggacaatcataattta 52846173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 42491248 - 42491202
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  42491248 tatttgaacaaccatttgattgacaacttttgggacaaccataattt 42491202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 50831652 - 50831698
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  50831652 tatttgaacaaccatttgattgacaacttttgggacaaccataattt 50831698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 21617294 - 21617253
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  21617294 tatttgcacgaaaatcaaaacaatagagagataaagtaaaaa 21617253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 33860757 - 33860716
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  33860757 tatttgcacggaaaccaaaacaatagagagataaagtaaaaa 33860716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 51573592 - 51573633
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  51573592 tatttgtacgaaaatcaaagcaatagagagataaagtaaaaa 51573633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 51852187 - 51852146
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  51852187 tatttgcacaaaaaccaaaacaatagagagataaagtaaaaa 51852146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 51887774 - 51887733
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  51887774 tatttgcacgaaaatcaaaacaatagagagataaagtaaaaa 51887733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 12799901 - 12799841
Alignment:
Q  127 aatagaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataattta 187  Q
    ||||||||| |  ||||||||||||||||||||| |||| || || |||||||||||||||    
T  12799901 aatagaggaatgttatttgaacaaccatttggttaacaacttatgtgacaatcataattta 12799841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 7628139 - 7628101
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaa 242  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  7628139 tatttgtacgaaa-ccaaaacaatagagagataaagtaaa 7628101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 12595527 - 12595570
Alignment:
Q  140 tatttgaacaaccatttggttgacaatttttgggacaatcataa 183  Q
    ||||||||||||||||| | |||||||||||||||||| |||||    
T  12595527 tatttgaacaaccattttgatgacaatttttgggacaaccataa 12595570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 5249973 - 5249939
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||| ||||||||||    
T  5249973 acgaaaaccaaaacaatagagagagaaagtaaaaa 5249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 14451497 - 14451463
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||||    
T  14451497 acgaaaaccataacaatagagagataaagtaaaaa 14451463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 27326707 - 27326753
Alignment:
Q  198 gttgatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||||    
T  27326707 gttggtatttgcacgaaaaccaaagcaatagagaaataaagtaaaaa 27326753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 31559643 - 31559609
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||| ||||||||||    
T  31559643 acgaaaaccaaaacaatagagagagaaagtaaaaa 31559609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 40609800 - 40609742
Alignment:
Q  129 tagaggagtactatttgaacaacca-tttggttgacaatttttgggacaatcataattt 186  Q
    |||||||||  |||||||||||||| |||||||||||| ||||| ||||| ||||||||    
T  40609800 tagaggagtgttatttgaacaaccaatttggttgacaacttttgtgacaaccataattt 40609742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 42667305 - 42667275
Alignment:
Q  214 aaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  42667305 aaaccaaaacaatagagagataaagtaaaaa 42667275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 51194373 - 51194339
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||||    
T  51194373 acgaaaaccataacaatagagagataaagtaaaaa 51194339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 2313281 - 2313322
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||||||| |||| ||||||||| ||||    
T  2313281 tatttgtacgaaaaccaaaacactagaaagataaagtgaaaa 2313322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 4949616 - 4949575
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||  |||||||||||||||    
T  4949616 tatttgtacggaaaccaaaacaataatgagataaagtaaaaa 4949575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 9362639 - 9362680
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| ||| |||||||||||||||||||||||||||    
T  9362639 tatttgcacggaaatcaaaacaatagagagataaagtaaaaa 9362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 12595597 - 12595630
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||||||||||||||||||||| |||||||||    
T  12595597 acgaaaaccaaaacaatagagagagaaagtaaaa 12595630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 17683323 - 17683294
Alignment:
Q  215 aaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||||||||||||||||||||||    
T  17683323 aaccaaaacaatagagagataaagtaaaaa 17683294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 28657401 - 28657442
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||| |||||||| ||||||||||||||||||||||    
T  28657401 tatttgcacggaaaccaaagcaatagagagataaagtaaaaa 28657442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 49768278 - 49768319
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  49768278 tatttgcacgaaaatcaaagcaatagagagataaagtaaaaa 49768319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 56271471 - 56271430
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  56271471 tatttgcacgaaaaccaaagcaatagagagataaaataaaaa 56271430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 23853845 - 23853805
Alignment:
Q  203 tatttgtacgaaaaccaaaacaatagagagataaagtaaaa 243  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  23853845 tatttgaacaaaaaccaaaataatagagagataaagtaaaa 23853805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 31092619 - 31092579
Alignment:
Q  204 atttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||| ||||||| || ||||||||||||||||||||||||    
T  31092619 atttgcacgaaaatcacaacaatagagagataaagtaaaaa 31092579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 32696685 - 32696713
Alignment:
Q  140 tatttgaacaaccatttggttgacaattt 168  Q
    |||||||||||||||||||||||||||||    
T  32696685 tatttgaacaaccatttggttgacaattt 32696713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 51746334 - 51746290
Alignment:
Q  200 tgatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||| | ||| |||||| ||||||||||||||||||||||||    
T  51746334 tgatattggcacggaaaccataacaatagagagataaagtaaaaa 51746290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 53299298 - 53299255
Alignment:
Q  203 tatttgtacgaaaaccaaaacaat--agagagataaagtaaaaa 244  Q
    ||||||||||||||||||||||||  |||||||||| |||||||    
T  53299298 tatttgtacgaaaaccaaaacaataaagagagataaggtaaaaa 53299255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 12116 - 12002
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  |||||||||||| ||||||||||||| ||||| ||||| |||||||||          |||| ||| || ||||||||||||||||||||    
T  12116 agaggagtgttatttgaacaactatttggttgacaacttttgcgacaaccataatttacaaagaaaaagttggtatgtgcacgaaaaccaaaacaataga 12017  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  12016 gagataaagtaaaaa 12002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 11148 - 11034
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||||| |||||||||||| || || |||||||||||||||          || | |||||| ||||||| ||||||||||||    
T  11148 agaggagtgttatttgaacaaccttttggttgacaacttatgtgacaatcataatttacaaagaaaaagtgggtatttgcacgaaaatcaaaacaataga 11049  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  11048 gagataaagtaaaaa 11034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 38609 - 38495
Alignment:
Q  130 agaggagtactatttgaacaaccatttggttgacaatttttgggacaatcataatttatnnnnnnnnngttgatatttgtacgaaaaccaaaacaataga 229  Q
    ||||||||  ||||||||||||||||| |||||||| |||||||||||  ||||||||          |||| |||| | |||||||||||| |||||||    
T  38609 agaggagtgttatttgaacaaccatttagttgacaacttttgggacaactataatttacaaagaaaaagttggtattcgcacgaaaaccaaagcaataga 38510  T
Q  230 gagataaagtaaaaa 244  Q
    |||||||||||||||    
T  38509 gagataaagtaaaaa 38495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 883 - 840
Alignment:
Q  201 gatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  883 gatatttgcacgaaaaccaaaataatagagagataaagtaaaaa 840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 8330 - 8284
Alignment:
Q  198 gttgatatttgtacgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||    
T  8330 gttgatatttgcacgaaaaccaaagcaatagagggataaagtaaaaa 8284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 111 - 77
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||| ||||||||||||||||||||||||    
T  111 acgaaaaccataacaatagagagataaagtaaaaa 77  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 134270 - 134304
Alignment:
Q  210 acgaaaaccaaaacaatagagagataaagtaaaaa 244  Q
    |||||||||||||||||| ||||||||||||||||    
T  134270 acgaaaaccaaaacaataaagagataaagtaaaaa 134304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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