View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_high_7 (Length: 354)
Name: NF18978_high_7
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 135 - 345
Target Start/End: Complemental strand, 41548341 - 41548124
Alignment:
| Q |
135 |
aagtaagtacaaggaatactcgaatccagcaacatac------tatcctcgttaaaagggtaa-taaactttaccttccatcgatcgtgatacgaggctt |
227 |
Q |
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| T |
41548341 |
aagtaagtacaaggaatactcgaatccagcaacatatatataatatcctcgttgaaagggtaaataaactttaccttccatcgatagtgatacgaggctt |
41548242 |
T |
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| Q |
228 |
tctagctgctttacctcctgattttattttaagagcgtcacccaatttctcagtaaccacccattcatttaccctacctgcctcaaacaaacctataagt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41548241 |
tctagctgctttacctcctgattttattttaagagcgtcacccaatttctcagtaaccacccattcatttaccctacctgcctcaaacaaacctataagt |
41548142 |
T |
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| Q |
328 |
gttgccttggtcctatgc |
345 |
Q |
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|||||||||||||||||| |
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| T |
41548141 |
gttgccttggtcctatgc |
41548124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 41548466 - 41548369
Alignment:
| Q |
19 |
gcaagatcgtagcatccacacaaaaagagataggctcccacaccaagttctaggaaatgaatcctgttttaacatcaacaaacaagtagaaaagtgag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41548466 |
gcaagatcgtagcatccacacaaaaagagataggctcccacaccaagttctaggaaatgaatcctgttttaacatcaacaaacaagtagaaaagtgag |
41548369 |
T |
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