View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18978_low_1 (Length: 567)
Name: NF18978_low_1
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18978_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 351
Target Start/End: Complemental strand, 8467709 - 8467380
Alignment:
| Q |
22 |
taggaaacaaaaaacttgacttaataatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatata |
121 |
Q |
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| T |
8467709 |
taggaaacaaaaaacttgacttaataatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatata |
8467610 |
T |
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| Q |
122 |
atatgagcctcttctaatgtaaacctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagcta |
221 |
Q |
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| T |
8467609 |
agatgagcctcttctaatgtaaacctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagcta |
8467510 |
T |
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| Q |
222 |
gggttttcatcaaacaagatggattatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaatt |
321 |
Q |
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| T |
8467509 |
gggttttcatcaaacaagatggattatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaatt |
8467410 |
T |
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| Q |
322 |
aagctctgacactgcacacaagcatactag |
351 |
Q |
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| T |
8467409 |
aagctctgacactgcacacaaccatactag |
8467380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 420 - 550
Target Start/End: Complemental strand, 8467315 - 8467185
Alignment:
| Q |
420 |
ctgtgatttagggcagaaagctggttgtgcttgatagctctcgtggtagttagagttaggcacaagctcatcagataagaaaatagtatatcaggaaggc |
519 |
Q |
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| T |
8467315 |
ctgtgattcagggcagaaagctggttgtgcttgatagctctcgtggtagttagagttaggcacaagttcatcagataagaaaatagtatatcaggaaggc |
8467216 |
T |
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| Q |
520 |
tttacaaagagaagctaacagtggtctgttg |
550 |
Q |
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| T |
8467215 |
tttacaaagagaagctaacagtggtctgttg |
8467185 |
T |
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