View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18978_low_11 (Length: 311)

Name: NF18978_low_11
Description: NF18978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18978_low_11
NF18978_low_11
[»] chr3 (1 HSPs)
chr3 (1-294)||(28708149-28708442)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 28708442 - 28708149
Alignment:
Q  1 aaaggtcttgtgggtaaagctagatatcatatggcaaaagcatatgatcatatttagtggaaatttctcgttgttgtgttgaactctatggactcacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28708442 aaaggtcttgtgggtaaagctagatatcatatggcaaaagcatatgatcatatttagtggaaatttctcgttgttgtgttgaactctatggactcacaaa 28708343  T
Q  101 aatggcaaaatcttatttttagatgcatttcatcagtgtcgttttagtgatcgtaaatggtaatccttgtccaatcttttcccctcatcgtggactccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28708342 aatggcaaaatcttatttttagatgcatttcatcagtgtcgttttagtgatcgtaaatggtaatccttgtccaatcttttcccctcatcgtggactccat 28708243  T
Q  201 caaggggatccattatctctttacttgtttatactttgtgcagaggtgttttcacgtctactcattaaagctcaagaagagaaggacttacatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28708242 caaggggatccattatctctttacttgtttatactttgtgcagaggtgttttcacgtctactcattaaagctcaagaagagaaggacttacatg 28708149  T

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